Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N1207_RS13480 Genome accession   NZ_CP104097
Coordinates   2580457..2580792 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain GL-4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2575457..2585792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS13460 (N1207_13460) gcvT 2576050..2577138 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  N1207_RS13465 (N1207_13465) hepAA 2577579..2579252 (+) 1674 WP_041850014.1 DEAD/DEAH box helicase -
  N1207_RS13470 (N1207_13470) yqhG 2579273..2580067 (+) 795 WP_003230200.1 YqhG family protein -
  N1207_RS13475 (N1207_13475) sinI 2580250..2580423 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  N1207_RS13480 (N1207_13480) sinR 2580457..2580792 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  N1207_RS13485 (N1207_13485) tasA 2580885..2581670 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  N1207_RS13490 (N1207_13490) sipW 2581734..2582306 (-) 573 WP_003246088.1 signal peptidase I SipW -
  N1207_RS13495 (N1207_13495) tapA 2582290..2583051 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  N1207_RS13500 (N1207_13500) yqzG 2583323..2583649 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  N1207_RS13505 (N1207_13505) spoIITA 2583691..2583870 (-) 180 WP_003230176.1 YqzE family protein -
  N1207_RS13510 (N1207_13510) comGG 2583941..2584315 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  N1207_RS13515 (N1207_13515) comGF 2584316..2584699 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  N1207_RS13520 (N1207_13520) comGE 2584725..2585072 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  N1207_RS13525 (N1207_13525) comGD 2585056..2585487 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  N1207_RS13530 (N1207_13530) comGC 2585477..2585773 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=727564 N1207_RS13480 WP_003226345.1 2580457..2580792(+) (sinR) [Bacillus subtilis strain GL-4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=727564 N1207_RS13480 WP_003226345.1 2580457..2580792(+) (sinR) [Bacillus subtilis strain GL-4]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1