Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | N2A96_RS04360 | Genome accession | NZ_CP104047 |
| Coordinates | 831268..832497 (+) | Length | 409 a.a. |
| NCBI ID | WP_003103169.1 | Uniprot ID | A0A0E2URT0 |
| Organism | Streptococcus parauberis strain KSP10 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 807074..867391 | 831268..832497 | within | 0 |
Gene organization within MGE regions
Location: 807074..867391
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2A96_RS04245 (N2A96_04245) | - | 808371..808991 (+) | 621 | WP_037619847.1 | glucosaminidase domain-containing protein | - |
| N2A96_RS04250 (N2A96_04250) | - | 809132..809935 (+) | 804 | WP_003106599.1 | glycoside hydrolase family 73 protein | - |
| N2A96_RS04255 (N2A96_04255) | - | 809995..810516 (+) | 522 | WP_003106600.1 | hypothetical protein | - |
| N2A96_RS04260 (N2A96_04260) | - | 810590..810970 (+) | 381 | WP_003103937.1 | DUF1149 family protein | - |
| N2A96_RS04265 (N2A96_04265) | - | 810970..811818 (+) | 849 | WP_003104962.1 | DegV family protein | - |
| N2A96_RS04270 (N2A96_04270) | dapB | 811836..812603 (+) | 768 | WP_003105813.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| N2A96_RS04275 (N2A96_04275) | - | 812600..813811 (+) | 1212 | WP_003102825.1 | CCA tRNA nucleotidyltransferase | - |
| N2A96_RS04280 (N2A96_04280) | - | 813804..815681 (+) | 1878 | WP_003106601.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| N2A96_RS04285 (N2A96_04285) | - | 815685..816158 (+) | 474 | WP_003105038.1 | GNAT family N-acetyltransferase | - |
| N2A96_RS04290 (N2A96_04290) | - | 816261..817997 (+) | 1737 | WP_003102488.1 | ABC transporter ATP-binding protein | - |
| N2A96_RS04295 (N2A96_04295) | - | 817997..819766 (+) | 1770 | WP_003106602.1 | ABC transporter ATP-binding protein | - |
| N2A96_RS04300 (N2A96_04300) | gdhA | 819897..821243 (+) | 1347 | WP_003106603.1 | NADP-specific glutamate dehydrogenase | - |
| N2A96_RS04305 (N2A96_04305) | - | 821309..821719 (+) | 411 | WP_003106604.1 | peptide deformylase | - |
| N2A96_RS04310 (N2A96_04310) | - | 821757..821942 (-) | 186 | WP_003102863.1 | hypothetical protein | - |
| N2A96_RS04315 (N2A96_04315) | - | 821948..822976 (+) | 1029 | Protein_799 | ABC transporter ATP-binding protein | - |
| N2A96_RS04320 (N2A96_04320) | mvk | 823139..824017 (+) | 879 | WP_003106606.1 | mevalonate kinase | - |
| N2A96_RS04325 (N2A96_04325) | mvaD | 823999..824934 (+) | 936 | WP_003104536.1 | diphosphomevalonate decarboxylase | - |
| N2A96_RS04330 (N2A96_04330) | - | 824935..825936 (+) | 1002 | WP_003104029.1 | phosphomevalonate kinase | - |
| N2A96_RS04335 (N2A96_04335) | fni | 825936..826931 (+) | 996 | WP_003106607.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| N2A96_RS04340 (N2A96_04340) | - | 826994..828277 (-) | 1284 | WP_003106609.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| N2A96_RS04345 (N2A96_04345) | - | 828274..829440 (-) | 1167 | WP_003104825.1 | hydroxymethylglutaryl-CoA synthase | - |
| N2A96_RS04350 (N2A96_04350) | - | 829632..830471 (+) | 840 | WP_003106617.1 | thymidylate synthase | - |
| N2A96_RS04355 (N2A96_04355) | - | 830548..831063 (+) | 516 | WP_003106618.1 | dihydrofolate reductase | - |
| N2A96_RS04360 (N2A96_04360) | clpX | 831268..832497 (+) | 1230 | WP_003103169.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| N2A96_RS04365 (N2A96_04365) | yihA | 832506..833105 (+) | 600 | WP_003106619.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| N2A96_RS04370 (N2A96_04370) | - | 833270..833935 (+) | 666 | WP_003106620.1 | hypothetical protein | - |
| N2A96_RS04375 (N2A96_04375) | clpC | 833958..836066 (-) | 2109 | WP_003105519.1 | AAA family ATPase | Regulator |
| N2A96_RS04380 (N2A96_04380) | rplJ | 836517..837017 (+) | 501 | WP_003104757.1 | 50S ribosomal protein L10 | - |
| N2A96_RS04385 (N2A96_04385) | rplL | 837083..837448 (+) | 366 | WP_003103838.1 | 50S ribosomal protein L7/L12 | - |
| N2A96_RS04395 (N2A96_04395) | - | 838137..838991 (+) | 855 | WP_003106628.1 | replication initiator protein A | - |
| N2A96_RS04400 (N2A96_04400) | - | 838988..839149 (+) | 162 | WP_003104080.1 | hypothetical protein | - |
| N2A96_RS10570 | - | 839546..839632 (+) | 87 | WP_375543854.1 | YSIRK-type signal peptide-containing protein | - |
| N2A96_RS04410 (N2A96_04410) | - | 841049..842611 (+) | 1563 | WP_003106629.1 | hypothetical protein | - |
| N2A96_RS04415 (N2A96_04415) | - | 842698..843072 (+) | 375 | WP_003106630.1 | hypothetical protein | - |
| N2A96_RS04420 (N2A96_04420) | - | 843023..843556 (+) | 534 | WP_003106631.1 | YdbC family protein | - |
| N2A96_RS04425 (N2A96_04425) | - | 843613..843837 (+) | 225 | WP_003104561.1 | hypothetical protein | - |
| N2A96_RS04430 (N2A96_04430) | - | 843858..844589 (+) | 732 | WP_003106632.1 | type IV secretion system protein | - |
| N2A96_RS04435 (N2A96_04435) | - | 844637..844942 (+) | 306 | WP_003106633.1 | hypothetical protein | - |
| N2A96_RS04440 (N2A96_04440) | - | 845016..845366 (+) | 351 | WP_233847601.1 | PrgI family protein | - |
| N2A96_RS04445 (N2A96_04445) | - | 845326..847792 (+) | 2467 | Protein_825 | VirB4-like conjugal transfer ATPase, CD1110 family | - |
| N2A96_RS04450 (N2A96_04450) | - | 847807..850398 (+) | 2592 | WP_259976739.1 | phage tail tip lysozyme | - |
| N2A96_RS04455 (N2A96_04455) | - | 850415..851050 (+) | 636 | WP_003106642.1 | hypothetical protein | - |
| N2A96_RS04460 (N2A96_04460) | - | 851076..851351 (+) | 276 | WP_003104435.1 | hypothetical protein | - |
| N2A96_RS04465 (N2A96_04465) | - | 851335..852198 (+) | 864 | WP_003106643.1 | hypothetical protein | - |
| N2A96_RS04470 (N2A96_04470) | - | 852231..852893 (+) | 663 | WP_003106647.1 | LPXTG cell wall anchor domain-containing protein | - |
| N2A96_RS04475 (N2A96_04475) | - | 852965..853501 (+) | 537 | WP_003103611.1 | hypothetical protein | - |
| N2A96_RS04480 (N2A96_04480) | - | 853502..855334 (+) | 1833 | WP_003106649.1 | VirD4-like conjugal transfer protein, CD1115 family | - |
| N2A96_RS04485 (N2A96_04485) | - | 855409..855735 (+) | 327 | WP_003105373.1 | hypothetical protein | - |
| N2A96_RS04490 (N2A96_04490) | - | 855780..857507 (+) | 1728 | WP_003106651.1 | type IA DNA topoisomerase | - |
| N2A96_RS04495 (N2A96_04495) | - | 857508..861359 (+) | 3852 | WP_003106653.1 | PBECR4 domain-containing protein | - |
| N2A96_RS04500 (N2A96_04500) | - | 861424..861684 (+) | 261 | WP_003103735.1 | hypothetical protein | - |
| N2A96_RS04505 (N2A96_04505) | mobC | 861889..862260 (+) | 372 | WP_003105086.1 | plasmid mobilization relaxosome protein MobC | - |
| N2A96_RS04510 (N2A96_04510) | - | 862264..863907 (+) | 1644 | WP_003106654.1 | helical hairpin domain-containing protein | - |
| N2A96_RS04515 (N2A96_04515) | - | 863969..864103 (+) | 135 | WP_003105827.1 | hypothetical protein | - |
| N2A96_RS04520 (N2A96_04520) | - | 864816..865106 (-) | 291 | WP_003106656.1 | hypothetical protein | - |
| N2A96_RS04525 (N2A96_04525) | - | 865416..865799 (+) | 384 | Protein_841 | type I restriction endonuclease | - |
| N2A96_RS04530 (N2A96_04530) | - | 865962..866417 (+) | 456 | WP_003106658.1 | CopY/TcrY family copper transport repressor | - |
| N2A96_RS04535 (N2A96_04535) | - | 866460..866594 (+) | 135 | WP_142377571.1 | heavy metal-associated domain-containing protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45058.55 Da Isoelectric Point: 4.4670
>NTDB_id=727303 N2A96_RS04360 WP_003103169.1 831268..832497(+) (clpX) [Streptococcus parauberis strain KSP10]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA
Nucleotide
Download Length: 1230 bp
>NTDB_id=727303 N2A96_RS04360 WP_003103169.1 831268..832497(+) (clpX) [Streptococcus parauberis strain KSP10]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
86.797 |
100 |
0.868 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.359 |
98.044 |
0.553 |