Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   N2A96_RS00885 Genome accession   NZ_CP104047
Coordinates   141657..142613 (+) Length   318 a.a.
NCBI ID   WP_003103712.1    Uniprot ID   A0A0E2UAX9
Organism   Streptococcus parauberis strain KSP10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136657..147613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS00845 (N2A96_00845) - 137333..137707 (+) 375 WP_003103833.1 DUF1033 family protein -
  N2A96_RS00850 (N2A96_00850) comYA 137761..138702 (+) 942 WP_004347183.1 competence type IV pilus ATPase ComGA Machinery gene
  N2A96_RS00855 (N2A96_00855) comYB 138614..139669 (+) 1056 WP_142379024.1 competence type IV pilus assembly protein ComGB Machinery gene
  N2A96_RS00860 (N2A96_00860) comYC 139666..139992 (+) 327 WP_004347181.1 competence type IV pilus major pilin ComGC Machinery gene
  N2A96_RS00865 (N2A96_00865) comGD 139982..140389 (+) 408 WP_239639209.1 competence type IV pilus minor pilin ComGD -
  N2A96_RS00870 (N2A96_00870) comGE 140361..140660 (+) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE -
  N2A96_RS00875 (N2A96_00875) comGF 140638..141075 (+) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF -
  N2A96_RS00880 (N2A96_00880) comGG 141053..141550 (+) 498 WP_004347175.1 competence type IV pilus minor pilin ComGG -
  N2A96_RS00885 (N2A96_00885) comYH 141657..142613 (+) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  N2A96_RS00890 (N2A96_00890) - 142669..143862 (+) 1194 WP_004347172.1 acetate kinase -
  N2A96_RS00895 (N2A96_00895) - 143973..144185 (+) 213 WP_003108636.1 helix-turn-helix transcriptional regulator -
  N2A96_RS00900 (N2A96_00900) - 144178..144630 (+) 453 WP_003108634.1 hypothetical protein -
  N2A96_RS00905 (N2A96_00905) - 144639..145292 (+) 654 WP_003108632.1 CPBP family intramembrane glutamic endopeptidase -
  N2A96_RS00910 (N2A96_00910) proC 145309..146079 (-) 771 WP_004347169.1 pyrroline-5-carboxylate reductase -
  N2A96_RS00915 (N2A96_00915) pepA 146091..147158 (-) 1068 WP_003105090.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36032.20 Da        Isoelectric Point: 4.9473

>NTDB_id=727281 N2A96_RS00885 WP_003103712.1 141657..142613(+) (comYH) [Streptococcus parauberis strain KSP10]
MNFEKIEKAFELILENSQLIETDLHTHIYDAIIEQNSYLLGAKGANKQVEGNIQALKELHLTKEEWRRAFQFVFIKASQT
ERLQANHQFTPDSLGFILLYMMETLVSNHSFDLLEIGSGTGNLAQTILNNTSKSIDYLGIELDDLLIDLSASISEIMDSS
AKFLQEDAVRPQILKVSDVIISDLPVGYYPNDDIASRYKVASKEEHTYAHHLLMEQSLKYLKEGGYAIFLAPTNILTSPQ
SDLLKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGKTKNQAVETFVFPITNIQSTELIQDFMNKFKNWKLANVIS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=727281 N2A96_RS00885 WP_003103712.1 141657..142613(+) (comYH) [Streptococcus parauberis strain KSP10]
ATGAATTTTGAAAAAATAGAAAAAGCCTTTGAGCTTATTTTAGAGAATAGTCAGCTTATTGAAACGGACTTACATACACA
TATTTATGATGCAATTATTGAACAAAATTCCTACTTATTGGGTGCAAAAGGGGCAAACAAACAAGTTGAAGGAAATATTC
AAGCATTAAAAGAATTACACTTAACAAAAGAAGAATGGCGACGTGCCTTTCAATTTGTATTTATTAAGGCCTCACAGACC
GAGAGATTGCAAGCCAATCATCAATTTACTCCAGACAGTCTTGGTTTTATCTTGCTCTATATGATGGAGACTTTAGTATC
TAATCATTCATTTGATTTATTAGAAATTGGTAGTGGAACTGGTAATTTGGCTCAAACTATCTTAAACAATACGAGTAAGT
CTATTGACTATCTTGGTATTGAGCTGGATGACTTGCTTATCGATTTATCAGCAAGTATTTCTGAAATAATGGATTCTTCT
GCAAAATTTTTACAGGAAGATGCTGTGAGACCACAAATTCTTAAAGTAAGTGATGTTATCATTAGTGACTTACCAGTTGG
TTATTACCCAAATGACGATATAGCAAGTCGTTATAAAGTAGCTAGTAAGGAAGAGCATACTTATGCTCACCATTTATTAA
TGGAACAGTCATTGAAGTATCTAAAAGAAGGTGGTTATGCTATATTTTTAGCTCCAACTAATATTTTAACTAGTCCACAA
AGCGATCTGTTGAAGCAATGGTTAAAAAACTATGCCCAGGTTATGGCAGTTGTTACTTTACCTGAAACGATGTTTGGCAA
TCCAAATAATGCCAAGTCGATTTTTGTCTTAGGAAAAACGAAAAATCAAGCGGTTGAAACATTTGTCTTTCCAATTACTA
ACATTCAATCCACAGAGCTTATTCAAGATTTCATGAACAAGTTTAAAAATTGGAAACTTGCTAATGTCATTTCATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(78-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2UAX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

63.608

99.371

0.632
  comYH Streptococcus mutans UA159

63.291

99.371

0.629