Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   GDK21_RS04975 Genome accession   NZ_AP019542
Coordinates   1016961..1017530 (-) Length   189 a.a.
NCBI ID   WP_152064719.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011961..1022530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK21_RS04955 (SAKG03_09260) - 1013466..1014824 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  GDK21_RS04960 (SAKG03_09270) - 1014963..1016474 (+) 1512 WP_000414165.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  GDK21_RS04975 (SAKG03_09280) comK/comK1 1016961..1017530 (-) 570 WP_152064719.1 competence protein ComK Regulator
  GDK21_RS04980 (SAKG03_09290) - 1017740..1017958 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  GDK21_RS04985 (SAKG03_09300) - 1018039..1019025 (-) 987 WP_000668818.1 lipoate--protein ligase -
  GDK21_RS04990 (SAKG03_09310) - 1019224..1019400 (+) 177 WP_000214898.1 YkvS family protein -
  GDK21_RS04995 (SAKG03_09320) - 1019415..1020017 (+) 603 WP_001033865.1 CPBP family glutamic-type intramembrane protease -
  GDK21_RS15220 - 1020332..1020394 (+) 63 WP_228764722.1 hypothetical protein -
  GDK21_RS05005 - 1020933..1021034 (+) 102 WP_001792055.1 hypothetical protein -
  GDK21_RS05010 - 1021056..1021316 (+) 261 WP_033860750.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22670.94 Da        Isoelectric Point: 9.7253

>NTDB_id=72722 GDK21_RS04975 WP_152064719.1 1016961..1017530(-) (comK/comK1) [Staphylococcus aureus strain KG-03]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGREIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=72722 GDK21_RS04975 WP_152064719.1 1016961..1017530(-) (comK/comK1) [Staphylococcus aureus strain KG-03]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGAGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment