Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N2A98_RS15530 Genome accession   NZ_CP104045
Coordinates   3546427..3548652 (-) Length   741 a.a.
NCBI ID   WP_275622292.1    Uniprot ID   -
Organism   Pseudomonas sp. FJ2-5-13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3541427..3553652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A98_RS15495 (N2A98_15515) murB 3541797..3542816 (-) 1020 WP_044273963.1 UDP-N-acetylmuramate dehydrogenase -
  N2A98_RS15500 (N2A98_15520) - 3542813..3543277 (-) 465 WP_044273962.1 low molecular weight protein-tyrosine-phosphatase -
  N2A98_RS15505 (N2A98_15525) kdsB 3543277..3544041 (-) 765 WP_044273961.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N2A98_RS15510 (N2A98_15530) - 3544038..3544223 (-) 186 WP_003174668.1 Trm112 family protein -
  N2A98_RS15515 (N2A98_15535) lpxK 3544248..3545258 (-) 1011 WP_275622291.1 tetraacyldisaccharide 4'-kinase -
  N2A98_RS15520 (N2A98_15540) - 3545258..3545686 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  N2A98_RS15525 (N2A98_15545) exbB 3545683..3546318 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N2A98_RS15530 (N2A98_15550) comA 3546427..3548652 (-) 2226 WP_275622292.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N2A98_RS15535 (N2A98_15555) - 3548788..3549303 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  N2A98_RS15540 (N2A98_15560) - 3549307..3550665 (-) 1359 WP_275622293.1 sensor histidine kinase -
  N2A98_RS15545 (N2A98_15565) - 3550652..3551380 (-) 729 WP_078803337.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80314.41 Da        Isoelectric Point: 10.7352

>NTDB_id=727208 N2A98_RS15530 WP_275622292.1 3546427..3548652(-) (comA) [Pseudomonas sp. FJ2-5-13]
MKTGMLALALGLLTLRWLPALPPGAVLLAMLVLALMLLPFRSYPLAFFLVGLSWACFSAQRALDDRLQPALDGQTRWVEG
RVVGLPQQTGTGVRFELADGRSRKGRLPKRIRVSWHGAPVVNSGERWRLALTLKRPAGLLNFHGVDHEAWLLAQRIGATA
TVKDGERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLAPEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAVLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQVGFWLSFAAVAVLLLAFGGRLGPWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPVANLFAVPWISLVVLPLAL
LGTALLWVPLAGVGVLWLAGGALDGLFKGLALLAGQLPAWVPPEVPLGYWLVSLMGTVMLLLPKGVPFRVLGWPMLLMAV
FPPREWVPHGQVEVLQLDVGQGQALILRTRHHTLLYDAGPRSGPVDLGARVVLPSLKKLGVGQLDMMLLSHADADHAGGA
AAVARGLPVKRVVGGETEGLPAFFATQPCTSGERWEWDGVSFELWQWAGGLEGNPRSCVLHVQANGERLLLTGDIDRAAE
QAFLASPLAVPTDWLQAPHHGSRSSSSWSFVQRLAPTSVLISRGRSNTFGHPHPQVLERYQALGSRVYDSAEQGAVRIRL
GAFVPATVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=727208 N2A98_RS15530 WP_275622292.1 3546427..3548652(-) (comA) [Pseudomonas sp. FJ2-5-13]
ATGAAGACAGGGATGTTGGCGTTGGCGCTGGGGTTGCTGACGTTGCGTTGGTTGCCGGCGCTGCCGCCCGGCGCCGTGCT
ATTGGCCATGCTGGTGCTGGCCTTGATGCTGTTGCCTTTTCGGTCCTATCCCTTGGCGTTCTTCCTGGTGGGGTTGAGCT
GGGCTTGCTTCAGCGCGCAGCGGGCGCTGGATGATCGATTGCAGCCAGCTCTGGACGGACAGACTCGCTGGGTGGAGGGG
CGTGTGGTCGGCTTGCCTCAGCAGACGGGTACGGGCGTGCGCTTTGAACTGGCCGACGGCCGGTCGCGCAAGGGTCGGCT
GCCCAAACGTATTCGCGTGTCCTGGCACGGCGCGCCAGTGGTGAACAGCGGCGAACGCTGGCGCCTGGCGTTGACGCTCA
AGCGGCCTGCGGGCCTGCTCAATTTCCATGGGGTTGACCATGAAGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACTGCA
ACGGTAAAAGACGGTGAACGTCTCGCACCGGCCCGCAATGCCTGGCGCGATGCTGTTCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGCGAGGCAGGGCTGGCGGCGCTGGTGTTGGGCGATGGTTCCGGTCTGGCGCCTGAGGATTGGCAGGTGT
TGCAGGACACGGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGTTGGCGGGCTTGATCTACGGCTTG
GTCGCGGTATTAGCGCGCTATGGTTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGCGGCCTGGCATTTGGCGC
AGCACTGGGTTATGGCCTGCTGGCAGGGTTTGGCGTGCCGGTGCAGCGGGCTTGTGTGATGGTCGGCCTGGTGTTGCTGT
GGCGTCTGCGGTTCCGCCATTTGGGGCTATGGTGGCCGTTGTTGCTGGCGCTGAACGGCGTGCTGGTGCTGGAGCCCTTG
GCCAGCCTGCAGGTGGGGTTCTGGCTGTCGTTTGCGGCGGTCGCGGTGTTGCTGTTGGCGTTCGGCGGGCGCCTGGGACC
GTGGAGCGTCTGGCAGGCGTGGACCCGGCCCCAGTGGTTGATTGCCATTGGCTTGTTTCCGGTGTTGCTGGTGCTGGGTT
TGCCCATCAGCCTCAGCGCACCGGTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCCTTGGCGCTG
CTGGGCACGGCGTTGTTGTGGGTGCCGCTGGCGGGGGTAGGTGTGCTGTGGCTGGCCGGCGGCGCGCTGGACGGATTGTT
CAAGGGCCTGGCGCTGCTGGCCGGGCAATTGCCGGCTTGGGTGCCACCCGAGGTGCCGCTGGGGTATTGGCTGGTCAGCC
TGATGGGCACGGTGATGTTACTGCTGCCCAAAGGGGTGCCGTTCCGAGTGCTGGGCTGGCCCATGTTGTTGATGGCCGTT
TTCCCGCCCAGGGAGTGGGTGCCCCACGGACAGGTCGAGGTGCTGCAACTGGATGTCGGCCAGGGGCAGGCACTGATCCT
GCGTACCCGCCACCACACGTTGCTCTACGATGCCGGGCCGCGCTCGGGGCCTGTCGACCTCGGGGCGCGCGTCGTGTTGC
CGTCGTTGAAAAAACTCGGGGTAGGGCAGTTGGACATGATGCTGCTCAGCCATGCCGACGCTGATCACGCCGGTGGTGCG
GCAGCAGTGGCTCGGGGGCTGCCCGTCAAACGCGTGGTGGGCGGCGAAACCGAGGGCTTGCCAGCCTTTTTCGCCACCCA
GCCCTGTACCAGCGGCGAGCGCTGGGAATGGGACGGTGTGTCGTTTGAACTGTGGCAGTGGGCGGGTGGGCTTGAGGGCA
ATCCGAGGTCGTGCGTGCTGCACGTCCAGGCCAATGGCGAACGCCTGCTGCTCACCGGCGACATTGATCGCGCCGCCGAA
CAGGCATTTCTGGCATCGCCGCTGGCGGTTCCGACCGACTGGCTGCAGGCCCCGCACCATGGCAGCCGCAGTTCTTCGTC
CTGGTCTTTCGTGCAGCGGTTGGCGCCCACCTCGGTGTTGATTTCCCGCGGGCGCAGCAATACGTTCGGCCATCCTCATC
CGCAGGTCCTGGAACGCTACCAAGCACTGGGCAGCCGGGTGTATGACAGCGCCGAACAGGGCGCCGTGCGCATACGCCTG
GGGGCGTTTGTGCCTGCGACCGTTGCGCGCAGCCAGCGTCGTTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.244

96.356

0.571
  comA Ralstonia pseudosolanacearum GMI1000

34.591

100

0.371