Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N2A98_RS15525 Genome accession   NZ_CP104045
Coordinates   3545683..3546318 (-) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas sp. FJ2-5-13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540683..3551318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A98_RS15490 (N2A98_15510) - 3541054..3541725 (+) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -
  N2A98_RS15495 (N2A98_15515) murB 3541797..3542816 (-) 1020 WP_044273963.1 UDP-N-acetylmuramate dehydrogenase -
  N2A98_RS15500 (N2A98_15520) - 3542813..3543277 (-) 465 WP_044273962.1 low molecular weight protein-tyrosine-phosphatase -
  N2A98_RS15505 (N2A98_15525) kdsB 3543277..3544041 (-) 765 WP_044273961.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N2A98_RS15510 (N2A98_15530) - 3544038..3544223 (-) 186 WP_003174668.1 Trm112 family protein -
  N2A98_RS15515 (N2A98_15535) lpxK 3544248..3545258 (-) 1011 WP_275622291.1 tetraacyldisaccharide 4'-kinase -
  N2A98_RS15520 (N2A98_15540) - 3545258..3545686 (-) 429 WP_014718877.1 biopolymer transporter ExbD -
  N2A98_RS15525 (N2A98_15545) exbB 3545683..3546318 (-) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N2A98_RS15530 (N2A98_15550) comA 3546427..3548652 (-) 2226 WP_275622292.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N2A98_RS15535 (N2A98_15555) - 3548788..3549303 (+) 516 WP_003192045.1 DUF2062 domain-containing protein -
  N2A98_RS15540 (N2A98_15560) - 3549307..3550665 (-) 1359 WP_275622293.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=727207 N2A98_RS15525 WP_003192043.1 3545683..3546318(-) (exbB) [Pseudomonas sp. FJ2-5-13]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=727207 N2A98_RS15525 WP_003192043.1 3545683..3546318(-) (exbB) [Pseudomonas sp. FJ2-5-13]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAAGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAACTCAAGGAACTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTTATCCATGAGCTGGAGCGCTATAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTCGGTTTGCTCGGCACGGTCCTGGGCATGATCGATATCTTCA
GCGCGTTCACGGGCTCGGGCATGACCACCAATGCGTCGGTACTGGCCGGGGGGATCTCCAAGGCCCTGATCACCACTGCC
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858