Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N0B28_RS18780 Genome accession   NZ_CP104044
Coordinates   4148619..4150841 (-) Length   740 a.a.
NCBI ID   WP_177346315.1    Uniprot ID   -
Organism   Pseudomonas sp. SD17-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4143619..4155841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B28_RS18745 (N0B28_18760) murB 4144019..4145038 (-) 1020 WP_043862886.1 UDP-N-acetylmuramate dehydrogenase -
  N0B28_RS18750 (N0B28_18765) - 4145035..4145499 (-) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  N0B28_RS18755 (N0B28_18770) kdsB 4145499..4146263 (-) 765 WP_078479737.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N0B28_RS18760 (N0B28_18775) - 4146260..4146445 (-) 186 WP_003247142.1 Trm112 family protein -
  N0B28_RS18765 (N0B28_18780) lpxK 4146483..4147493 (-) 1011 WP_043862889.1 tetraacyldisaccharide 4'-kinase -
  N0B28_RS18770 (N0B28_18785) - 4147493..4147924 (-) 432 WP_078479738.1 biopolymer transporter ExbD -
  N0B28_RS18775 (N0B28_18790) exbB 4147921..4148556 (-) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N0B28_RS18780 (N0B28_18795) comA 4148619..4150841 (-) 2223 WP_177346315.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N0B28_RS18785 (N0B28_18800) - 4150982..4151521 (+) 540 WP_043862892.1 DUF2062 domain-containing protein -
  N0B28_RS18790 (N0B28_18805) - 4151489..4152268 (-) 780 WP_058541067.1 ABC transporter permease -
  N0B28_RS18795 (N0B28_18810) - 4152265..4153197 (-) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  N0B28_RS18800 (N0B28_18815) - 4153342..4153965 (-) 624 WP_054915819.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79822.20 Da        Isoelectric Point: 10.4128

>NTDB_id=727188 N0B28_RS18780 WP_177346315.1 4148619..4150841(-) (comA) [Pseudomonas sp. SD17-1]
MRTRMLALALGLLALNVLPALPSVGWLWGIGITGMLCLVCRWAVPGLFLLGFAWACCSAQWALDDRLRPELEGRTLWLEG
RVVGLAQQGPHSVRFELAEASSRRAQLPQRLSLSWFGGPPVNSGERWRLAVQLQRPSGLLNPHGPDQEAAMLARRIGATG
RVRAGERLAPASHAWRDSVRQRLLGAQAHGREGALAALVLGDGGALAQEDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARVGAWPRALPWLPWACGLAFAAALAYGLMAGFQVPVRRACIMLAVVLLWRLRFRHLGAWIPLLLALNGVLLVEPL
ASLQPGFWLSFAAVAVLVYVFGGRLGAWNPWLAWCRAQWLIAIGLLPVLLALGLPISLSAPLANLVAVPWVSIAVLPLAL
AGTLLQGLPLLGEALLWLAGGSLAALFWTLAQVAHWQPAWTPVALPIWAWLMVGGGAVLLLLPGGLPMRVLGWPLLLLAG
CAPRNEIAHGQLEVWQLDVGQGQAFVLRTRHHAMLYDAGPATRGSDLGERVVVPTLRKLGVRELDLALISHAHADHAGGA
LAVQRSVPLVRVVGGDPDELPGQLQAQACASGEQWQWDGVLFSLWRWQQAGDSNQRSCVLHVDAGGETLLLTGDIDAQAE
RAWLRESTADPVDWLQAPHHGSRTSSSQAFLERTRPRGVLISRGRHNAFGHPHAQVMARYQALGITVHDSALHGAVRLVL
GSFGQAVGQRSQRRFWREPT

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=727188 N0B28_RS18780 WP_177346315.1 4148619..4150841(-) (comA) [Pseudomonas sp. SD17-1]
ATGCGCACAAGGATGTTGGCGCTGGCCTTGGGGCTGTTGGCGCTCAACGTGCTACCTGCCTTGCCGTCGGTCGGCTGGCT
CTGGGGCATCGGCATAACGGGAATGTTATGCCTGGTGTGTCGATGGGCAGTGCCCGGTCTGTTCCTGCTTGGTTTTGCCT
GGGCCTGTTGCTCGGCGCAATGGGCGCTGGACGATCGACTGCGGCCCGAGCTGGAGGGGCGCACCCTGTGGCTGGAAGGT
CGGGTAGTGGGCCTGGCGCAGCAGGGCCCACATTCGGTGCGTTTCGAGCTGGCCGAAGCCTCCTCGCGCCGCGCCCAGTT
GCCGCAGCGGCTGAGCCTGAGCTGGTTTGGCGGGCCGCCGGTCAACAGTGGCGAGCGTTGGCGCCTGGCGGTGCAGCTGC
AGCGCCCCTCCGGCCTGCTCAACCCCCATGGGCCTGACCAGGAAGCGGCCATGCTGGCTCGGCGAATCGGTGCCACCGGC
CGCGTAAGGGCAGGTGAACGACTGGCCCCGGCCAGCCATGCGTGGCGTGATTCGGTGCGCCAGCGCCTGCTCGGGGCTCA
GGCCCATGGGCGCGAAGGTGCGCTGGCGGCGCTGGTGCTGGGTGACGGCGGGGCGCTGGCACAGGAGGACTGGCAGGTGC
TCCAGGCAACCGGCACGGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCCGGTCTGGTGTACGGCCTG
GTGGCCGGGTTGGCACGTGTGGGGGCATGGCCCAGGGCGCTGCCCTGGCTACCCTGGGCGTGCGGCCTGGCGTTTGCGGC
GGCCCTGGCGTACGGCTTGATGGCGGGCTTTCAGGTACCGGTACGACGCGCCTGCATCATGCTGGCGGTGGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTTGGGGCCTGGATTCCCTTGCTGCTTGCCCTCAACGGTGTATTGCTGGTGGAGCCATTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTCGCAGCGGTGGCGGTGCTGGTGTATGTGTTCGGCGGCCGGCTGGGGGC
CTGGAACCCCTGGCTGGCATGGTGCCGGGCCCAATGGCTGATCGCGATCGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGATCAGTCTCTCGGCACCGCTGGCCAATCTGGTTGCGGTGCCCTGGGTCAGTATCGCGGTGTTGCCCCTGGCGCTG
GCCGGCACACTGCTGCAGGGGCTCCCGTTGCTGGGGGAGGCCCTGTTGTGGCTGGCTGGAGGATCGCTGGCAGCCTTGTT
CTGGACACTGGCACAGGTGGCACATTGGCAACCGGCCTGGACACCGGTCGCCTTGCCGATATGGGCATGGTTGATGGTGG
GCGGTGGCGCGGTACTGCTGCTGTTGCCGGGCGGGCTGCCGATGCGGGTGCTGGGCTGGCCCTTGCTGCTGCTGGCCGGC
TGTGCGCCTCGCAACGAGATCGCCCATGGGCAACTGGAGGTGTGGCAGCTGGATGTCGGCCAGGGCCAGGCGTTTGTGCT
GCGTACCCGTCACCATGCGATGCTGTATGACGCAGGCCCGGCCACCCGTGGCAGCGACCTGGGTGAGCGGGTGGTCGTGC
CGACTCTGCGCAAGCTGGGGGTGCGCGAGCTGGACCTGGCGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGCGCC
CTGGCGGTGCAGCGCAGCGTGCCGCTGGTGCGTGTGGTGGGCGGCGACCCGGATGAGCTGCCCGGGCAACTGCAGGCCCA
GGCCTGCGCCAGTGGCGAGCAATGGCAGTGGGATGGCGTGCTCTTCAGCCTGTGGCGCTGGCAGCAGGCCGGCGACAGCA
ATCAGCGCTCCTGTGTGTTGCACGTGGATGCCGGCGGGGAAACCCTGCTGCTTACCGGTGACATCGATGCCCAGGCCGAG
CGCGCCTGGCTGCGCGAGTCGACAGCCGACCCGGTCGACTGGTTGCAGGCGCCCCATCATGGCAGCCGCACCTCGTCGAG
CCAGGCCTTTCTCGAGCGAACCCGGCCACGGGGCGTGCTGATTTCGCGAGGGCGCCACAATGCATTCGGGCATCCGCACG
CACAGGTGATGGCGCGTTACCAGGCGCTGGGTATCACCGTGCACGACAGCGCCCTGCACGGGGCGGTGCGCCTGGTGCTG
GGCAGCTTTGGCCAGGCGGTCGGGCAACGCAGCCAGCGGCGCTTCTGGCGGGAGCCGACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.083

97.162

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.184

100

0.362