Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N0B28_RS18775 Genome accession   NZ_CP104044
Coordinates   4147921..4148556 (-) Length   211 a.a.
NCBI ID   WP_162484877.1    Uniprot ID   -
Organism   Pseudomonas sp. SD17-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4142921..4153556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B28_RS18745 (N0B28_18760) murB 4144019..4145038 (-) 1020 WP_043862886.1 UDP-N-acetylmuramate dehydrogenase -
  N0B28_RS18750 (N0B28_18765) - 4145035..4145499 (-) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  N0B28_RS18755 (N0B28_18770) kdsB 4145499..4146263 (-) 765 WP_078479737.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N0B28_RS18760 (N0B28_18775) - 4146260..4146445 (-) 186 WP_003247142.1 Trm112 family protein -
  N0B28_RS18765 (N0B28_18780) lpxK 4146483..4147493 (-) 1011 WP_043862889.1 tetraacyldisaccharide 4'-kinase -
  N0B28_RS18770 (N0B28_18785) - 4147493..4147924 (-) 432 WP_078479738.1 biopolymer transporter ExbD -
  N0B28_RS18775 (N0B28_18790) exbB 4147921..4148556 (-) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N0B28_RS18780 (N0B28_18795) comA 4148619..4150841 (-) 2223 WP_177346315.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N0B28_RS18785 (N0B28_18800) - 4150982..4151521 (+) 540 WP_043862892.1 DUF2062 domain-containing protein -
  N0B28_RS18790 (N0B28_18805) - 4151489..4152268 (-) 780 WP_058541067.1 ABC transporter permease -
  N0B28_RS18795 (N0B28_18810) - 4152265..4153197 (-) 933 WP_043862894.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.00 Da        Isoelectric Point: 7.3618

>NTDB_id=727187 N0B28_RS18775 WP_162484877.1 4147921..4148556(-) (exbB) [Pseudomonas sp. SD17-1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLTSEKLKTLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=727187 N0B28_RS18775 WP_162484877.1 4147921..4148556(-) (exbB) [Pseudomonas sp. SD17-1]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTCACCAGCGAGAAGCTCAAGACCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTGGCCGCAGGCCTGGCCAAC
TCCCGCCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGTGTCATCCACGAGCTGGAGCGCTACAT
CAACGCACTGGGCACCATCGCGGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCCTCGGTATTGGCGGGGGGGATCTCCAAGGCGTTGATCACCACCGCA
GCCGGCCTGATGGTGGGTATCCCGGCGGTATTCTTCCATCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTCCAGGGGGACCGTGATGTCGACCTGAGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858