Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MRX62_RS07885 Genome accession   NZ_CP104027
Coordinates   1642556..1643968 (+) Length   470 a.a.
NCBI ID   WP_060871719.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637556..1648968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS07865 (MRX62_07855) - 1637563..1638180 (-) 618 WP_229926302.1 hypothetical protein -
  MRX62_RS07870 (MRX62_07860) sucD 1638447..1639319 (-) 873 WP_060871721.1 succinate--CoA ligase subunit alpha -
  MRX62_RS07875 (MRX62_07865) sucC 1639348..1640511 (-) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  MRX62_RS07880 (MRX62_07870) - 1640760..1642370 (+) 1611 WP_060871720.1 PAS domain-containing sensor histidine kinase -
  MRX62_RS07885 (MRX62_07875) pilR 1642556..1643968 (+) 1413 WP_060871719.1 sigma-54 dependent transcriptional regulator Regulator
  MRX62_RS07890 (MRX62_07880) pilB 1644062..1645795 (-) 1734 WP_060871718.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRX62_RS07895 (MRX62_07885) - 1646636..1647103 (-) 468 WP_023907060.1 pilin -
  MRX62_RS07900 (MRX62_07890) - 1648401..1648847 (-) 447 WP_060871716.1 pilin -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51273.12 Da        Isoelectric Point: 7.2157

>NTDB_id=727127 MRX62_RS07885 WP_060871719.1 1642556..1643968(+) (pilR) [Xylella fastidiosa subsp. pauca strain 50088]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVA
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=727127 MRX62_RS07885 WP_060871719.1 1642556..1643968(+) (pilR) [Xylella fastidiosa subsp. pauca strain 50088]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGCTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTAGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGGCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.269

100

0.479