Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   P1K34_RS02415 Genome accession   NZ_CP119598
Coordinates   462097..462795 (-) Length   232 a.a.
NCBI ID   WP_136274158.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1042     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 457097..467795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K34_RS02395 (P1K34_02395) - 457509..458468 (+) 960 WP_136117038.1 hypothetical protein -
  P1K34_RS02405 (P1K34_02405) - 459987..460502 (+) 516 WP_322972656.1 helical hairpin domain-containing protein -
  P1K34_RS02410 (P1K34_02410) - 460718..462079 (-) 1362 WP_272153186.1 HAMP domain-containing sensor histidine kinase -
  P1K34_RS02415 (P1K34_02415) scnR 462097..462795 (-) 699 WP_136274158.1 response regulator transcription factor Regulator
  P1K34_RS02420 (P1K34_02420) - 462993..463148 (+) 156 WP_136274160.1 lacticin 481 family lantibiotic -
  P1K34_RS02425 (P1K34_02425) - 463179..463334 (+) 156 WP_136274162.1 lacticin 481 family lantibiotic -
  P1K34_RS02430 (P1K34_02430) - 463533..463688 (+) 156 WP_136021211.1 lacticin 481 family lantibiotic -
  P1K34_RS02435 (P1K34_02435) - 463709..466492 (+) 2784 WP_272153187.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26304.47 Da        Isoelectric Point: 6.1274

>NTDB_id=727068 P1K34_RS02415 WP_136274158.1 462097..462795(-) (scnR) [Streptococcus pyogenes strain 1042]
MNFESQLLNKRILIVDDDVALSKSIKEVLISRDFKNISCAYSISEGIDIFSVSKIDLIILDVMLPDGEGHLLAKYIRKYS
DVPILFLTAKNNPDDEIRGLESGGDDYVTKPFLPKSLTYRIITLLRRAYKDESELIELTNCTIDLNNASVEKNGQHLSLT
PTEIQILRKLFSNKNYIVSTESICDTVWGLESLGYEKSLMVHIRNIREKIEITPSKPNHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=727068 P1K34_RS02415 WP_136274158.1 462097..462795(-) (scnR) [Streptococcus pyogenes strain 1042]
ATGAATTTCGAGTCTCAATTATTGAATAAACGCATATTGATTGTCGACGATGATGTCGCACTTAGCAAATCAATTAAAGA
GGTACTTATCAGTCGGGATTTCAAGAATATCAGCTGTGCTTATAGTATAAGCGAAGGAATTGATATCTTCTCAGTTTCTA
AAATTGATCTCATTATTTTAGATGTTATGCTACCAGATGGAGAAGGGCACTTACTTGCAAAATACATTAGGAAATATTCA
GATGTGCCAATTCTCTTTTTAACAGCCAAAAACAATCCTGATGATGAAATTCGAGGACTTGAATCCGGAGGGGATGATTA
TGTTACGAAGCCATTTCTTCCCAAATCTTTAACATATCGTATTATTACACTGTTGAGAAGGGCTTATAAAGATGAATCGG
AACTAATTGAGCTAACAAATTGTACCATAGACTTAAACAATGCAAGTGTTGAAAAAAATGGTCAACATTTGTCACTCACT
CCAACAGAAATACAAATCCTACGAAAATTATTTTCAAATAAAAATTATATTGTATCAACTGAATCGATTTGTGATACCGT
TTGGGGACTTGAGAGCCTTGGCTACGAAAAATCACTTATGGTACATATTCGTAATATCAGAGAAAAAATCGAGATAACTC
CATCCAAGCCAAATCATCTTATTACTGTAAAAGGGCTTGGTTATAAACTAGTTATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

41.379

100

0.414
  vicR Streptococcus mutans UA159

38.095

99.569

0.379
  micA Streptococcus pneumoniae Cp1015

37.391

99.138

0.371