Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   N0B71_RS27035 Genome accession   NZ_CP104011
Coordinates   5989642..5991852 (-) Length   736 a.a.
NCBI ID   WP_259756134.1    Uniprot ID   -
Organism   Pseudomonas sp. GCEP-101 isolate Gut     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5984642..5996852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B71_RS27000 murB 5985001..5986020 (-) 1020 WP_259756125.1 UDP-N-acetylmuramate dehydrogenase -
  N0B71_RS27005 - 5986017..5986481 (-) 465 WP_259756126.1 low molecular weight protein-tyrosine-phosphatase -
  N0B71_RS27010 kdsB 5986481..5987245 (-) 765 WP_259756127.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N0B71_RS27015 - 5987250..5987435 (-) 186 WP_009621404.1 Trm112 family protein -
  N0B71_RS27020 lpxK 5987491..5988489 (-) 999 WP_259756129.1 tetraacyldisaccharide 4'-kinase -
  N0B71_RS27025 - 5988489..5988938 (-) 450 WP_259756130.1 biopolymer transporter ExbD -
  N0B71_RS27030 exbB 5988935..5989570 (-) 636 WP_259756132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N0B71_RS27035 comA 5989642..5991852 (-) 2211 WP_259756134.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N0B71_RS27040 - 5992005..5992535 (+) 531 WP_259756136.1 DUF2062 domain-containing protein -
  N0B71_RS27045 - 5992703..5993950 (-) 1248 WP_259756138.1 lipoprotein-releasing ABC transporter permease subunit -
  N0B71_RS27050 lolD 5994106..5994804 (-) 699 WP_259756140.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  N0B71_RS27055 - 5994797..5996050 (-) 1254 WP_259756141.1 lipoprotein-releasing ABC transporter permease subunit -
  N0B71_RS27060 - 5996175..5996750 (+) 576 WP_259756142.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79492.09 Da        Isoelectric Point: 9.1046

>NTDB_id=726985 N0B71_RS27035 WP_259756134.1 5989642..5991852(-) (comA) [Pseudomonas sp. GCEP-101 isolate Gut]
MFALALGLLALRWMPALPPGWALLLCALLGLRLLFTRTYAVGLFLLGFAWACQSAQWALDERLAPMLDGRTLWLEGRVEG
LPDRSGPSVRLVLGDVSSPRAKVPPTLRLSWFDGPPVEGGERWRLAVKLKRPHGMVNGAGFDYEAWLTAQRIGATGSVKD
GQRLEGSSGPRAWREAWRQRLLAVDAHGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYAVVA
GLARFGCWPTRLPWLPCACLLAACGAWAYSLMAGFEVPLQRACIMVSIVLLWRLRYRHRGLWTPLLGALLAVLLVEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAVGLLPASIALGLPLSVSGVLANLIAVPWVELVVVPLALLG
SLALGVPALGDALLWVSGGLLELLFRLLGWMAALAPAWQPVAAPVWAVALAMLGALLLLAPAGVPLRALGLAMFLPLFWP
TLPVPAPGTAEIRVLDVGQGLSVLIRTRSQVWLYDTGARNGDFDIGERVVVPTLRSLGIGHLDLLMLSHADNDHAGGAVA
VKHALRPAQVISGEPERLVPELQARPCRNEDWAIDGVRLSSWQWSGARESNDRSCVLEIEANGERILLTGDLPQPAELAW
LAAHPRQRIDWLLAGHHGSRSSSGPAFLRAIQPSTAIISRGANNPYGHPHPSVVERFRALGVRIQDTAEQGALTLTLGAH
GEVRGVREGAHFWQEN

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=726985 N0B71_RS27035 WP_259756134.1 5989642..5991852(-) (comA) [Pseudomonas sp. GCEP-101 isolate Gut]
ATGTTCGCGCTGGCCTTGGGCCTGCTGGCGCTGCGCTGGATGCCTGCGCTGCCGCCTGGCTGGGCGCTGTTGCTGTGTGC
GCTGCTTGGCTTGCGCTTGCTGTTCACGCGCACCTACGCCGTCGGGCTGTTCCTGCTCGGCTTTGCCTGGGCCTGCCAGT
CGGCCCAGTGGGCGCTGGATGAGCGCCTGGCGCCCATGCTGGACGGCCGTACCCTTTGGCTGGAGGGGAGGGTGGAAGGC
CTGCCGGATCGTTCCGGCCCGTCGGTGCGCCTCGTTCTCGGCGACGTTTCCAGCCCCCGCGCGAAGGTTCCCCCCACCTT
GCGCCTGTCGTGGTTCGATGGGCCGCCGGTGGAAGGCGGCGAGCGCTGGCGCCTGGCAGTGAAGCTCAAGCGTCCCCATG
GCATGGTCAACGGCGCCGGCTTCGATTACGAGGCCTGGCTCACCGCCCAGCGCATCGGCGCCACCGGCAGTGTGAAGGAC
GGCCAGCGCCTGGAAGGTTCCAGCGGCCCGCGGGCCTGGCGCGAAGCCTGGCGGCAGCGCCTGCTGGCGGTGGATGCCCA
CGGCCGTTCCGGGGCGCTCGCCGCCCTCGTGCTGGGCGACGCCTCCGGGCTGACCACGGCGGACTGGCAAGTGTTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATTTCCGGCTCGCACATCTCGCTGCTGGCTGGTCTGCTCTACGCCGTGGTGGCC
GGCCTGGCGCGCTTCGGCTGCTGGCCGACGCGCCTGCCCTGGCTGCCCTGTGCCTGCCTGCTGGCCGCCTGTGGCGCCTG
GGCCTACAGCCTGATGGCGGGGTTCGAGGTGCCGCTGCAGCGCGCCTGCATCATGGTCTCCATCGTCCTGCTGTGGCGCC
TGCGCTATCGCCATCGCGGATTGTGGACGCCGCTGCTGGGCGCGCTGCTGGCGGTGCTGCTGGTCGAACCGCTGGTGGTC
CTGTTGCCGGGGTTCTGGCTGTCCTACGCGGCGGTGGCGCTGCTGATCTTCGGCTTCTCCGGGCGGCTGGGGCGTTGGAC
CGCCTGGCGCACCTGGCTGCGGGCGCAGTGGCTGATGGCGGTCGGACTGTTGCCGGCATCGATTGCGCTGGGGTTGCCGC
TGAGCGTTTCCGGCGTGCTGGCCAATCTGATCGCCGTGCCCTGGGTGGAATTGGTAGTCGTGCCGCTGGCGTTGCTGGGC
AGCCTGGCGTTGGGCGTTCCCGCGCTGGGCGACGCCTTGCTGTGGGTGTCGGGTGGTCTGCTCGAGCTGCTGTTCCGTCT
GCTGGGCTGGATGGCGGCACTGGCACCCGCCTGGCAGCCCGTCGCCGCGCCCGTCTGGGCGGTGGCGCTGGCGATGCTCG
GGGCACTCCTGTTACTGGCGCCGGCCGGGGTGCCGTTGCGGGCGCTGGGGTTGGCGATGTTCCTGCCTTTGTTCTGGCCG
ACGCTCCCGGTGCCCGCGCCAGGCACGGCCGAGATCCGGGTGCTGGACGTGGGGCAGGGGCTGTCCGTGCTGATCCGCAC
GCGCAGCCAGGTCTGGCTCTACGACACGGGGGCGCGCAATGGCGATTTCGACATCGGCGAACGGGTCGTGGTGCCGACGC
TGCGCAGCCTGGGCATCGGCCACCTGGACCTGCTCATGCTCAGCCACGCGGACAACGACCATGCCGGCGGCGCCGTCGCG
GTGAAGCACGCTTTACGGCCTGCGCAGGTCATCAGCGGGGAACCGGAGCGGCTGGTGCCCGAGTTGCAGGCGCGGCCTTG
CCGAAACGAAGACTGGGCCATCGACGGCGTTCGTCTTTCAAGCTGGCAATGGTCGGGCGCGCGGGAAAGCAACGACCGCT
CCTGCGTGCTGGAAATCGAAGCCAACGGCGAGCGCATCCTGCTTACCGGCGATTTGCCGCAACCCGCCGAGTTGGCCTGG
CTGGCGGCGCATCCGCGGCAACGTATCGACTGGCTGCTGGCCGGCCACCACGGCAGCCGCAGTTCCTCCGGGCCGGCATT
CCTGCGGGCGATCCAGCCCTCCACGGCGATCATCTCCCGTGGTGCGAACAACCCTTACGGCCATCCGCATCCGTCGGTCG
TCGAGCGCTTCCGCGCACTGGGCGTCCGGATTCAGGATACGGCGGAGCAGGGCGCACTGACCCTGACGCTCGGCGCCCAT
GGCGAGGTCCGGGGAGTGCGGGAAGGCGCACATTTCTGGCAGGAAAATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-679)

Competence protein (Competence)

(196-460)

Domain of unknown function (DUF4131) (DUF4131)

(21-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.496

97.554

0.571
  comA Ralstonia pseudosolanacearum GMI1000

34.817

100

0.361