Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N0B71_RS27030 Genome accession   NZ_CP104011
Coordinates   5988935..5989570 (-) Length   211 a.a.
NCBI ID   WP_259756132.1    Uniprot ID   -
Organism   Pseudomonas sp. GCEP-101 isolate Gut     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5983935..5994570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B71_RS27000 murB 5985001..5986020 (-) 1020 WP_259756125.1 UDP-N-acetylmuramate dehydrogenase -
  N0B71_RS27005 - 5986017..5986481 (-) 465 WP_259756126.1 low molecular weight protein-tyrosine-phosphatase -
  N0B71_RS27010 kdsB 5986481..5987245 (-) 765 WP_259756127.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N0B71_RS27015 - 5987250..5987435 (-) 186 WP_009621404.1 Trm112 family protein -
  N0B71_RS27020 lpxK 5987491..5988489 (-) 999 WP_259756129.1 tetraacyldisaccharide 4'-kinase -
  N0B71_RS27025 - 5988489..5988938 (-) 450 WP_259756130.1 biopolymer transporter ExbD -
  N0B71_RS27030 exbB 5988935..5989570 (-) 636 WP_259756132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N0B71_RS27035 comA 5989642..5991852 (-) 2211 WP_259756134.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N0B71_RS27040 - 5992005..5992535 (+) 531 WP_259756136.1 DUF2062 domain-containing protein -
  N0B71_RS27045 - 5992703..5993950 (-) 1248 WP_259756138.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22969.24 Da        Isoelectric Point: 7.2806

>NTDB_id=726984 N0B71_RS27030 WP_259756132.1 5988935..5989570(-) (exbB) [Pseudomonas sp. GCEP-101 isolate Gut]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPSVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=726984 N0B71_RS27030 WP_259756132.1 5988935..5989570(-) (exbB) [Pseudomonas sp. GCEP-101 isolate Gut]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGCTTGAGCCGCGTGGCCCCGCCGCAACTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCGTCGTCCCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCTCCCGCGTCATCCACGAGCTGGAACGCTACCT
CAATGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGCACGGTATTCGGCATGATCCAAATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAATGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCGCTGATCACCACGGCGGCC
GGCCTGATCGTGGCGATTCCGTCGGTGTTCTTCCACCGCTACCTGCTGCGCCGCGTCGATGAACTGGTCATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGATCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806