Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N0B71_RS13055 Genome accession   NZ_CP104011
Coordinates   2848342..2849679 (-) Length   445 a.a.
NCBI ID   WP_259759275.1    Uniprot ID   -
Organism   Pseudomonas sp. GCEP-101 isolate Gut     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843342..2854679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B71_RS13025 - 2844204..2844683 (-) 480 WP_259759269.1 PilX N-terminal domain-containing pilus assembly protein -
  N0B71_RS13030 - 2844680..2845357 (-) 678 WP_259759270.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  N0B71_RS13035 pilV 2845354..2845842 (-) 489 WP_259759271.1 type IV pilus modification protein PilV -
  N0B71_RS13040 - 2845833..2846360 (-) 528 WP_259759272.1 GspH/FimT family pseudopilin -
  N0B71_RS13045 - 2846512..2847024 (-) 513 WP_259759273.1 GspH/FimT family pseudopilin -
  N0B71_RS13050 thiO 2847219..2848328 (+) 1110 WP_259759274.1 glycine oxidase ThiO -
  N0B71_RS13055 pilR 2848342..2849679 (-) 1338 WP_259759275.1 sigma-54 dependent transcriptional regulator Regulator
  N0B71_RS13060 pilS 2849695..2851284 (-) 1590 WP_259759276.1 ATP-binding protein Regulator
  N0B71_RS13065 - 2851274..2851510 (-) 237 WP_259759277.1 PP0621 family protein -
  N0B71_RS13070 - 2851650..2852675 (-) 1026 WP_259759278.1 outer membrane protein assembly factor BamD -
  N0B71_RS13075 rluD 2852823..2853782 (+) 960 WP_259759279.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N0B71_RS13080 pgeF 2853779..2854504 (+) 726 WP_259759280.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49713.97 Da        Isoelectric Point: 5.6288

>NTDB_id=726970 N0B71_RS13055 WP_259759275.1 2848342..2849679(-) (pilR) [Pseudomonas sp. GCEP-101 isolate Gut]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQMPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLARLRELVNSALRLRSPDAEEAPVDSRLLGDSPPMRNLRNQVAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRESQTFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKLGLFQAANGGTLFLDEVADLP
LPMQVKLLRVIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LKRLAGDSGLAAASVSPEALEKLKSYRFPGNVRELENMLERAYTLCENDVIQPHDLRLAETSTPDSGGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=726970 N0B71_RS13055 WP_259759275.1 2848342..2849679(-) (pilR) [Pseudomonas sp. GCEP-101 isolate Gut]
ATGAGCCGTCAAAAAGCCCTGATCGTCGACGACGAACCCGACATCCGCGAGCTGCTGGAAATCACCCTCGGCCGCATGAA
GCTGGACACTCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGACTTCCTGGCCCGCGAGCCCTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGACCTGGTGCAGTACATCCAGCAACGCCATCCGCAGATGCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTGCAGGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCGGTGGA
CCTCGCGCGCCTGCGCGAACTGGTGAACTCCGCCCTGCGCCTGCGCTCGCCCGACGCCGAGGAAGCACCGGTGGACAGCC
GCCTGCTCGGCGACTCGCCGCCCATGCGCAACCTGCGCAACCAGGTAGCCAAGCTCGCCCGCAGCCAGGCCCCGGTGTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCGCGGCTGATCCACGAGCAAGGCCCGCGGGAGAGCCAGACCTT
CGTCCCGGTGAACTGCGGGGCGATCCCTTCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAGGACAAGCTCGGCCTGTTCCAGGCAGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGTCATCCAGGAAAAAGCCGTACGTGCCGTGGGCGGCCAGCAGGAAGTGGCAGT
GGACGTGCGCATCCTCTGCGCGACCCACAAGGACCTGGCCGCCGAAGTGGCCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGGGTTCCACCGCTGCGCGAACGCCGTGAAGACATCCCACTGCTGACCGACCGCGTG
CTCAAGCGCCTTGCCGGCGACAGCGGGCTGGCGGCCGCCTCGGTCAGCCCCGAGGCCCTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTGGAGCGTGCCTACACGCTCTGCGAAAACGACGTCATCCAGCCCC
ACGACCTGCGCCTGGCCGAAACCAGTACCCCGGACAGCGGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAGGAC
TACCTCGAAGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAGGAGACCCGCTGGAACCGCACCGCAGCGGCGCAGCG
CCTGGGCCTGACCTTCCGCTCCATGCGCTACCGTCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.09

100

0.881
  pilR Acinetobacter baumannii strain A118

47.93

100

0.494