Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N0B71_RS13060 Genome accession   NZ_CP104011
Coordinates   2849695..2851284 (-) Length   529 a.a.
NCBI ID   WP_259759276.1    Uniprot ID   -
Organism   Pseudomonas sp. GCEP-101 isolate Gut     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844695..2856284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B71_RS13035 pilV 2845354..2845842 (-) 489 WP_259759271.1 type IV pilus modification protein PilV -
  N0B71_RS13040 - 2845833..2846360 (-) 528 WP_259759272.1 GspH/FimT family pseudopilin -
  N0B71_RS13045 - 2846512..2847024 (-) 513 WP_259759273.1 GspH/FimT family pseudopilin -
  N0B71_RS13050 thiO 2847219..2848328 (+) 1110 WP_259759274.1 glycine oxidase ThiO -
  N0B71_RS13055 pilR 2848342..2849679 (-) 1338 WP_259759275.1 sigma-54 dependent transcriptional regulator Regulator
  N0B71_RS13060 pilS 2849695..2851284 (-) 1590 WP_259759276.1 ATP-binding protein Regulator
  N0B71_RS13065 - 2851274..2851510 (-) 237 WP_259759277.1 PP0621 family protein -
  N0B71_RS13070 - 2851650..2852675 (-) 1026 WP_259759278.1 outer membrane protein assembly factor BamD -
  N0B71_RS13075 rluD 2852823..2853782 (+) 960 WP_259759279.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N0B71_RS13080 pgeF 2853779..2854504 (+) 726 WP_259759280.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58693.99 Da        Isoelectric Point: 7.6290

>NTDB_id=726971 N0B71_RS13060 WP_259759276.1 2849695..2851284(-) (pilS) [Pseudomonas sp. GCEP-101 isolate Gut]
MIAEGISLTGQGLRVLRLYHLYRLAIGLVLVLLISSSLDDDLLKLAHPELFHIGCWVYLILNILIAVLMPTPRQLLPLFI
LAALDVLLLSALFYTAGGIPSGIGNLMVVAVAIANILLRGRIGLLIAAIAAIGLIYLTFYLSLSQPTALNHYVQAGGLGA
LSFASALLIQALARRQQIVESIAEQRATTVANLEELNALILQRMRTGILVLGDRHRVLLANQSATTLLGGHELPGHSLAE
YSPQLVSSLQQWQQNPALRPPSLQPTESGPTVQPSFIPLRRDNEQHILMFLEDISQIAQQAQQLKLVALGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDKPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRYAGEMRESLREGQ
QIHVETGQGTVQTRMDPHQLTQVLTNLVQNGLRYSTQKNGTGQVWLRLFRDSETDLPVLEVLDDGPGVAAEQRSKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=726971 N0B71_RS13060 WP_259759276.1 2849695..2851284(-) (pilS) [Pseudomonas sp. GCEP-101 isolate Gut]
GTGATCGCTGAAGGCATCTCGCTCACGGGCCAGGGCCTGCGGGTCCTGCGCCTGTATCACCTGTACCGCCTGGCCATCGG
GCTGGTGCTGGTGCTGCTGATCTCCAGCAGCCTGGACGATGATCTGCTCAAGCTCGCCCACCCCGAACTGTTCCACATCG
GCTGCTGGGTCTACCTGATCCTCAATATCCTCATCGCAGTGCTGATGCCCACGCCGCGCCAGCTGCTGCCGCTGTTCATC
CTGGCGGCGCTGGATGTGCTGCTGCTCAGCGCGCTGTTCTATACCGCCGGCGGCATCCCCAGCGGCATCGGCAACCTGAT
GGTGGTCGCCGTCGCCATCGCCAACATCCTGCTGCGCGGACGCATCGGCCTGCTGATCGCGGCCATTGCCGCCATCGGCC
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACCGCCCTCAACCACTACGTACAGGCCGGCGGCCTGGGCGCC
CTGAGCTTCGCCTCGGCACTGCTGATCCAGGCCCTCGCCCGGCGCCAGCAAATCGTTGAGAGCATTGCCGAGCAGCGCGC
TACCACGGTCGCCAACCTCGAAGAACTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGTATCCTCGTTCTGGGCGACC
GTCACCGCGTGCTGCTGGCCAACCAGAGCGCCACCACCCTGCTGGGCGGCCATGAATTGCCCGGCCACTCGCTGGCCGAA
TACAGCCCGCAACTGGTCTCCAGCCTGCAGCAGTGGCAACAGAACCCCGCCCTGCGCCCGCCGAGCCTGCAGCCGACGGA
GTCCGGCCCGACCGTGCAACCGAGCTTCATCCCGCTGCGGCGCGACAACGAGCAACACATCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAAGCGCAGCAACTCAAGCTGGTCGCCCTCGGCCGGCTGACCGCCGGCATCGCCCACGAAATC
CGCAACCCGCTCGGCGCCATCAGCCACGCGGCGCAACTGCTGCTGGAATCCGAGGAGCTGGACAAACCCGACCGACGCCT
GGCGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTCATCGAGAACGTCCTCCAGCTCTCGCGCCGGCGCCAGT
CCGAGCCGCAGCTGCTCGACCTGAAGTACTGGCTGCACCGCTATGCCGGCGAAATGCGCGAGAGTCTGCGCGAGGGCCAG
CAGATCCACGTCGAGACCGGCCAGGGCACGGTGCAGACGCGCATGGACCCGCACCAGTTGACCCAGGTACTGACCAACCT
CGTGCAGAATGGGTTACGGTACAGCACTCAGAAAAACGGCACTGGCCAGGTCTGGCTGCGCCTGTTCCGCGACAGCGAAA
CGGACCTCCCCGTGCTGGAAGTACTCGATGACGGCCCCGGCGTCGCCGCTGAACAGCGCAGCAAGCTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACCGGCCTTGGCCTGTACATCTCCCGCGAACTGTGCGAAAGCAACCAGGCTCGGCTGGA
CTACAAGACGCGTGACGAAGGCGGCAGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

71.132

100

0.713