Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   P1J77_RS01245 Genome accession   NZ_CP119597
Coordinates   259386..260027 (+) Length   213 a.a.
NCBI ID   WP_002983671.1    Uniprot ID   A0A0H2UW05
Organism   Streptococcus pyogenes strain 1039     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 254386..265027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1J77_RS01225 (P1J77_01225) - 254942..255682 (+) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  P1J77_RS01230 (P1J77_01230) pknB 255679..257577 (+) 1899 WP_010922538.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  P1J77_RS01235 (P1J77_01235) liaF 257700..258392 (+) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  P1J77_RS01240 (P1J77_01240) - 258389..259393 (+) 1005 WP_002991890.1 sensor histidine kinase -
  P1J77_RS01245 (P1J77_01245) vraR 259386..260027 (+) 642 WP_002983671.1 response regulator transcription factor Regulator
  P1J77_RS01250 (P1J77_01250) - 260064..261464 (+) 1401 WP_011285657.1 Cof-type HAD-IIB family hydrolase -
  P1J77_RS01255 (P1J77_01255) - 261464..261841 (+) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  P1J77_RS01260 (P1J77_01260) cysK 261859..262800 (-) 942 WP_010922535.1 cysteine synthase A -
  P1J77_RS01265 (P1J77_01265) - 262928..263560 (-) 633 WP_009880468.1 YigZ family protein -
  P1J77_RS01270 (P1J77_01270) comFA/cflA 263616..264941 (+) 1326 WP_159330814.1 DEAD/DEAH box helicase Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23751.43 Da        Isoelectric Point: 5.1641

>NTDB_id=726957 P1J77_RS01245 WP_002983671.1 259386..260027(+) (vraR) [Streptococcus pyogenes strain 1039]
MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELGGVEATLEVLKKWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=726957 P1J77_RS01245 WP_002983671.1 259386..260027(+) (vraR) [Streptococcus pyogenes strain 1039]
ATGAGTAAGATAAAAGTGATATTGGTCGATGATCATGAAATGGTCCGCATGGGACTCAAGAGTTTTTTGAATTTACAAGC
TGATATTGATGTCGTTGGTGAGGCCTCTAATGGACGTGAAGGGGTTGATTTGGCATTGGCTTTGAAGCCAGATGTTTTGG
TTATGGATCTAGTGATGCCAGAGTTAGGCGGTGTTGAGGCAACTTTAGAAGTCCTAAAAAAATGGAAAGAGGCTAAGGTA
CTTGTGTTAACTTCCTATCTAGATAATGAAAAGATATACCCTGTCATTGATGCAGGAGCGAAGGGTTATATGTTAAAAAC
ATCGAGTGCGGCTGAAATTTTAAATGCCATTCGCAAGGTTTCAAAGGGAGAGTTAGCTATTGAAACAGAAGTTGACAAAA
AAATTAAGGCGCATGATCAACACCCTGACTTGCATGAGGAACTAACAGCGCGTGAGTATGACATTTTACACCTTTTAGCT
AAAGGGTATGATAATCAGACCATCGCTGATGAACTCTTTATTTCCTTAAAAACCGTCAAAACACATGTGTCCAATATTCT
AGCCAAGTTAGAAGTTGATGACCGAACCCAAGCGGTTGTCTATGCTTTTCGACATCATTTAGTCCCCCAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.385