Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   N0B18_RS16435 Genome accession   NZ_CP103995
Coordinates   3049606..3050250 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117109     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044606..3055250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS16400 (N0B18_16400) mrpB 3045798..3046229 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  N0B18_RS16405 (N0B18_16405) mrpC 3046229..3046570 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  N0B18_RS16410 (N0B18_16410) mrpD 3046563..3048044 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  N0B18_RS16415 (N0B18_16415) mrpE 3048050..3048526 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  N0B18_RS16420 (N0B18_16420) mrpF 3048526..3048810 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  N0B18_RS16425 (N0B18_16425) mnhG 3048794..3049168 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  N0B18_RS16430 (N0B18_16430) yuxO 3049207..3049587 (-) 381 WP_069837723.1 hotdog fold thioesterase -
  N0B18_RS16435 (N0B18_16435) comA 3049606..3050250 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  N0B18_RS16440 (N0B18_16440) comP 3050331..3052643 (-) 2313 WP_069964288.1 sensor histidine kinase Regulator
  N0B18_RS16445 (N0B18_16445) comX 3052659..3052880 (-) 222 WP_014480704.1 competence pheromone ComX -
  N0B18_RS16450 (N0B18_16450) - 3052882..3053745 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  N0B18_RS16455 (N0B18_16455) degQ 3053930..3054070 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  N0B18_RS16460 (N0B18_16460) - 3054292..3054417 (+) 126 WP_003228793.1 hypothetical protein -
  N0B18_RS16465 (N0B18_16465) - 3054532..3054900 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=726861 N0B18_RS16435 WP_003220716.1 3049606..3050250(-) (comA) [Bacillus subtilis strain SRCM117109]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=726861 N0B18_RS16435 WP_003220716.1 3049606..3050250(-) (comA) [Bacillus subtilis strain SRCM117109]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGACTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1