Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N0B18_RS13010 Genome accession   NZ_CP103995
Coordinates   2414181..2414516 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM117109     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2409181..2419516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B18_RS12990 (N0B18_12990) gcvT 2409773..2410861 (-) 1089 WP_069964209.1 glycine cleavage system aminomethyltransferase GcvT -
  N0B18_RS12995 (N0B18_12995) hepAA 2411303..2412976 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  N0B18_RS13000 (N0B18_13000) yqhG 2412997..2413791 (+) 795 WP_014480249.1 YqhG family protein -
  N0B18_RS13005 (N0B18_13005) sinI 2413974..2414147 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  N0B18_RS13010 (N0B18_13010) sinR 2414181..2414516 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  N0B18_RS13015 (N0B18_13015) tasA 2414609..2415394 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  N0B18_RS13020 (N0B18_13020) sipW 2415458..2416030 (-) 573 WP_003230181.1 signal peptidase I SipW -
  N0B18_RS13025 (N0B18_13025) tapA 2416014..2416775 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  N0B18_RS13030 (N0B18_13030) yqzG 2417047..2417373 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  N0B18_RS13035 (N0B18_13035) spoIITA 2417415..2417594 (-) 180 WP_014480252.1 YqzE family protein -
  N0B18_RS13040 (N0B18_13040) comGG 2417665..2418039 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  N0B18_RS13045 (N0B18_13045) comGF 2418040..2418423 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  N0B18_RS13050 (N0B18_13050) comGE 2418449..2418796 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  N0B18_RS13055 (N0B18_13055) comGD 2418780..2419211 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  N0B18_RS13060 (N0B18_13060) comGC 2419201..2419497 (-) 297 WP_069964211.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=726840 N0B18_RS13010 WP_003226345.1 2414181..2414516(+) (sinR) [Bacillus subtilis strain SRCM117109]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=726840 N0B18_RS13010 WP_003226345.1 2414181..2414516(+) (sinR) [Bacillus subtilis strain SRCM117109]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1