Detailed information NTG0726682

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NYP20_RS25150
• Genome accession: NZ_CP103965
• Coordinates: 5720770..5722113 (+)
• Length: 447 a.a.
• NCBI ID: WP_259496723.1
• Uniprot ID: -
• Organism: Pseudomonas sp. N3-W
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5715770..5727113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYP20_RS25125 (NYP20_25125)	pgeF	5715971..5716696 (-)	726	WP_259496716.1	peptidoglycan editing factor PgeF	-
NYP20_RS25130 (NYP20_25130)	rluD	5716693..5717655 (-)	963	WP_140681055.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
NYP20_RS25135 (NYP20_25135)	-	5717807..5718832 (+)	1026	WP_259496719.1	outer membrane protein assembly factor BamD	-
NYP20_RS25140 (NYP20_25140)	-	5718961..5719194 (+)	234	WP_259496720.1	PP0621 family protein	-
NYP20_RS25145 (NYP20_25145)	pilS	5719184..5720773 (+)	1590	WP_259496722.1	PAS domain-containing sensor histidine kinase	Regulator
NYP20_RS25150 (NYP20_25150)	pilR	5720770..5722113 (+)	1344	WP_259496723.1	sigma-54 dependent transcriptional regulator	Regulator
NYP20_RS25155 (NYP20_25155)	thiO	5722234..5723334 (-)	1101	WP_259496724.1	glycine oxidase ThiO	-
NYP20_RS25160 (NYP20_25160)	-	5723389..5723790 (-)	402	WP_259496725.1	type IV pilin protein	-
NYP20_RS25165 (NYP20_25165)	-	5723805..5726912 (-)	3108	WP_259496726.1	pilus assembly protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49727.01 Da
• Isoelectric Point: 6.7013

>NTDB_id=726682 NYP20_RS25150 WP_259496723.1 5720770..5722113(+) (pilR) [Pseudomonas sp. N3-W]
MKSPQQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLGRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPV
AMITAYGSLEIAINALKAGAFDFLTKPVDLTRLRELVTSALRLPVAGGSASAIDRRLLGDSPPMRHLRTQIDKLARSQAP
VYISGESGSGKELVARLIHDQGPRSDQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLGAEVAGERFRQDLYYRLNVIELRVPPLRERRDDIESLAS
HVLKRLANGSGQPAARLQPQALEALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLSEGNCAAESGVPDLTRIDNL
EDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=726682 NYP20_RS25150 WP_259496723.1 5720770..5722113(+) (pilR) [Pseudomonas sp. N3-W]
TTGAAGAGCCCACAGCAAAAAATCCTGATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGGCCG
GATGAAACTCGACACTTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTGGGCCGGGAGACGTTCGACCTGTGCC
TGACCGACATGCGTCTGCCCGACGGCACCGGCCTGGAGCTGGTACAGCACATCCAGCAACGTTATCCACAGGTGCCGGTC
GCAATGATTACGGCCTATGGCAGCCTGGAAATCGCCATCAATGCGCTCAAGGCCGGTGCCTTCGACTTCCTGACAAAACC
GGTTGATCTCACCCGATTGCGGGAGCTGGTCACCAGCGCCCTGCGCCTGCCTGTTGCCGGTGGCTCAGCCAGTGCCATTG
ACCGGCGTTTGCTCGGGGATTCGCCGCCCATGCGCCATCTGCGCACACAGATCGATAAACTGGCTCGCAGCCAGGCACCG
GTGTACATCAGTGGCGAATCCGGCAGCGGCAAGGAACTGGTTGCACGATTGATCCACGACCAAGGCCCCCGCTCGGACCA
GCCGTTTGTCCCCGTCAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTCTTCGGCCACCGCAAAGGCAGTT
TCAGCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCGGCCCATGGCGGCACGCTGTTCCTCGATGAAGTGGCCGAT
CTGCCACTGGCAATGCAGGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCAGTCCGTAGCATCGGCGGGCAGCAAGAAAC
CGTGGTCGATGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGGCGCCGAAGTGGCCGGCGAACGCTTTCGCCAGGATT
TGTACTACCGCCTCAATGTGATCGAATTACGCGTCCCGCCATTGCGCGAACGCCGCGACGACATCGAGTCCCTGGCCAGT
CACGTACTCAAACGCCTGGCAAACGGCAGCGGTCAACCAGCCGCCAGACTTCAGCCACAGGCCCTTGAAGCACTGAAAAG
CTATCGATTTCCGGGCAATGTGCGAGAACTGGAAAACATGCTCGAGCGCGCCCACACCCTGTGCGAGAACAAACAGATCG
AGGCCGGTGACTTGCGCCTGAGTGAAGGCAACTGCGCCGCCGAATCCGGCGTGCCGGACCTGACCCGGATCGACAATCTG
GAAGACTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGC
TCAGCGGTTGAGTCTTTCGTTTCGGTCAATGCGTTATAGGCTGAAGAAATTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Response regulator receiver domain (Response_reg) (8-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	99.105	0.783
pilR	Acinetobacter baumannii strain A118	48.822	100	0.51