Detailed information NTG0726675

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NYP20_RS20970
• Genome accession: NZ_CP103965
• Coordinates: 4822998..4825232 (-)
• Length: 744 a.a.
• NCBI ID: WP_259495658.1
• Uniprot ID: -
• Organism: Pseudomonas sp. N3-W
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4817998..4830232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYP20_RS20935 (NYP20_20935)	murB	4818376..4819395 (-)	1020	WP_259495652.1	UDP-N-acetylmuramate dehydrogenase	-
NYP20_RS20940 (NYP20_20940)	-	4819392..4819856 (-)	465	WP_259495653.1	low molecular weight protein-tyrosine-phosphatase	-
NYP20_RS20945 (NYP20_20945)	kdsB	4819856..4820620 (-)	765	WP_259495654.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NYP20_RS20950 (NYP20_20950)	-	4820617..4820802 (-)	186	WP_007945752.1	Trm112 family protein	-
NYP20_RS20955 (NYP20_20955)	lpxK	4820828..4821838 (-)	1011	WP_259495655.1	tetraacyldisaccharide 4'-kinase	-
NYP20_RS20960 (NYP20_20960)	-	4821838..4822266 (-)	429	WP_259495657.1	biopolymer transporter ExbD	-
NYP20_RS20965 (NYP20_20965)	exbB	4822263..4822898 (-)	636	WP_019689340.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NYP20_RS20970 (NYP20_20970)	comA	4822998..4825232 (-)	2235	WP_259495658.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NYP20_RS20975 (NYP20_20975)	-	4825369..4825884 (+)	516	WP_259495659.1	DUF2062 domain-containing protein	-
NYP20_RS20980 (NYP20_20980)	-	4826040..4826819 (-)	780	WP_259495661.1	ABC transporter permease	-
NYP20_RS20985 (NYP20_20985)	-	4826816..4827748 (-)	933	WP_259495662.1	ABC transporter ATP-binding protein	-
NYP20_RS20990 (NYP20_20990)	-	4827882..4828505 (-)	624	WP_259495663.1	glutathione S-transferase family protein	-
NYP20_RS20995 (NYP20_20995)	-	4828549..4829208 (-)	660	WP_259495664.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81041.21 Da
• Isoelectric Point: 9.7237

>NTDB_id=726675 NYP20_RS20970 WP_259495658.1 4822998..4825232(-) (comA) [Pseudomonas sp. N3-W]
MRTGMVALGLGLLTLRFLPALPPVWVWLLLPVVGLMLLPFRTYPLAFYLFGFSWACGYAQSALNDRLSIKLDGETRWVEG
RVTGLPQSNDTVVRFELADAQSRRGTLPSLMRLAWHAGPPVQSGERWRLAVKFKRPTGLLNPHGFDYGAWLLAQGIGATG
SVKDGQRLAPAQRAWRDGIRQRLLSVDAQGREGALAALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGSVYLL
IAGLARYGLWPGRLPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLAFDGVLLLNPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISVSGPLVNLLAVPWISLVVLPPAL
LGTLLLPLPYVGEWLLWLAGGLIELMFKGLALMAGQLPAWVPVAIPLWCWAIGALGAVLLLLPRGVPLRPLGWPMLLLLV
FPPRQLLPEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRLRDSDLGERVVLPALRKLGVKGLDLMLISHADADHAGGA
YAVANGLPVQRTVSGDPDGLSSALQAGPCESGEQWVWDGVHFQLWQWSAASDSNQKSCVLQIEASGERLLLTGDIDVPTE
RALLDSPLAVPTDWLQAPHHGSRSSSSMALLAGLQFKAVLVSRGQGNSFGHPHPTVIARYAKLGMAIYDSAEHGAIRLQL
GSFQPPSTMRLERRFWRDPPPLGP

Nucleotide

• Length: 2235 bp

>NTDB_id=726675 NYP20_RS20970 WP_259495658.1 4822998..4825232(-) (comA) [Pseudomonas sp. N3-W]
ATGCGCACAGGGATGGTGGCGCTGGGGCTCGGGCTCCTGACGTTACGTTTTTTACCGGCATTGCCGCCGGTATGGGTTTG
GCTGTTGCTGCCGGTGGTGGGGTTGATGCTCCTGCCGTTCAGAACGTATCCACTGGCGTTTTATCTGTTCGGCTTCAGTT
GGGCCTGTGGCTACGCGCAGTCGGCGTTGAATGACCGCTTGTCGATCAAGCTTGATGGCGAAACGCGCTGGGTCGAAGGG
CGGGTCACGGGCTTGCCGCAGAGTAACGACACGGTGGTGCGCTTCGAACTCGCAGATGCACAGTCGCGGCGCGGGACATT
GCCGTCGTTGATGCGTCTGGCCTGGCATGCTGGTCCGCCTGTCCAGAGCGGCGAGCGCTGGCGCCTGGCGGTGAAGTTCA
AGCGCCCGACCGGGCTGCTCAACCCTCATGGCTTTGACTATGGGGCCTGGCTGCTGGCGCAAGGCATCGGCGCGACTGGC
TCGGTCAAGGATGGTCAGCGCCTGGCCCCGGCGCAGCGGGCCTGGCGCGACGGTATCCGACAGCGCCTGCTCAGTGTTGA
CGCTCAGGGGCGGGAGGGAGCACTGGCGGCATTGGTGCTGGGCGACGGCGCCGGGCTGAGCCGCGAGGACTGGCAGGTGT
TACAGGACACCGGCACTGTTCATTTGCTGGTGATTTCCGGGCAGCACATCGGTTTGCTGGCCGGATCGGTCTATTTGCTC
ATCGCCGGGTTGGCCCGCTATGGCCTGTGGCCCGGGCGCCTACCCTGGTTGCCGTGGGCTTGTGGCCTGGCGTTCGCGGC
GGCGCTTGGCTATGGCTTGCTGGCCGGCTTCGATGTACCGGTGCGGCGCGCCTGCGTAATGATCGGTCTGGTGCTGTTAT
GGCGCTTGCGCTTTCGTCACCTCGGGGCCTGGTGGCCGCTGTTGCTGGCCTTTGACGGTGTTCTGCTGCTCAATCCGTTG
GCCAGCCTGCAACCGGGTTTCTGGTTGTCTTTTGCTGCGGTGGCGGTGCTGATTTTCACGTTTGGCGGCCGCCTCGGTCC
CTGGCGCTGGTGGCAGACCTGGACCCGAGCGCAATGGCTGATCGCAATCGGCTTGTGTCCGCTGTTGCTGGTGCTGGGGT
TGCCGATCAGTGTCAGCGGGCCATTGGTCAATCTGCTGGCGGTGCCATGGATCAGTCTGGTGGTGCTGCCTCCGGCCCTG
CTGGGGACATTGTTGCTGCCGCTGCCTTATGTGGGGGAGTGGCTGCTGTGGCTGGCGGGCGGTTTGATCGAACTGATGTT
CAAGGGGCTGGCATTGATGGCCGGTCAACTGCCCGCGTGGGTGCCAGTGGCCATTCCTCTTTGGTGCTGGGCGATAGGGG
CTCTGGGGGCCGTCCTGTTATTGCTGCCGCGTGGCGTGCCGTTGCGACCGTTGGGATGGCCGATGCTGCTGTTGCTGGTT
TTTCCACCCCGGCAGTTGCTGCCTGAGGGCATGGCCGAGGTTTGGCAACTGGATGTCGGCCAGGGGCTGGCCATTCTCGT
CCGCACCCGGCATCACACGTTGTTGTATGACGCCGGGCCGCGTTTGCGCGATTCCGATCTGGGGGAGCGGGTGGTGTTGC
CCGCGTTGCGCAAACTCGGGGTCAAGGGCCTCGACCTGATGCTCATCAGTCACGCCGACGCCGATCACGCCGGCGGCGCA
TACGCCGTGGCCAACGGGCTGCCAGTACAGCGAACAGTCAGCGGTGACCCCGATGGCCTGTCCAGCGCATTGCAGGCCGG
ACCTTGCGAAAGTGGCGAGCAATGGGTCTGGGACGGTGTCCACTTCCAGCTCTGGCAATGGTCGGCGGCCAGCGACAGCA
ATCAAAAATCCTGCGTGTTGCAGATTGAGGCCAGCGGCGAGCGACTCCTGTTGACCGGTGACATCGACGTCCCCACCGAG
CGGGCGCTGCTCGATAGCCCGCTTGCGGTGCCAACCGACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGTTGCTGGCCGGGCTGCAATTCAAGGCGGTACTGGTGTCCCGTGGCCAGGGCAATTCGTTCGGCCACCCACACC
CGACTGTCATTGCACGCTATGCAAAACTTGGGATGGCGATCTACGACAGCGCCGAGCACGGTGCCATTCGTTTGCAACTG
GGGAGTTTCCAGCCGCCCTCGACGATGCGCCTGGAGCGGCGCTTCTGGCGCGATCCGCCACCCCTTGGTCCATAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-670)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.196	96.64	0.591
comA	Ralstonia pseudosolanacearum GMI1000	32.591	100	0.374