Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NYP20_RS20965 Genome accession   NZ_CP103965
Coordinates   4822263..4822898 (-) Length   211 a.a.
NCBI ID   WP_019689340.1    Uniprot ID   A0A010ST93
Organism   Pseudomonas sp. N3-W     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4817263..4827898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYP20_RS20930 (NYP20_20930) - 4817665..4818138 (-) 474 WP_259495651.1 (2Fe-2S)-binding protein -
  NYP20_RS20935 (NYP20_20935) murB 4818376..4819395 (-) 1020 WP_259495652.1 UDP-N-acetylmuramate dehydrogenase -
  NYP20_RS20940 (NYP20_20940) - 4819392..4819856 (-) 465 WP_259495653.1 low molecular weight protein-tyrosine-phosphatase -
  NYP20_RS20945 (NYP20_20945) kdsB 4819856..4820620 (-) 765 WP_259495654.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NYP20_RS20950 (NYP20_20950) - 4820617..4820802 (-) 186 WP_007945752.1 Trm112 family protein -
  NYP20_RS20955 (NYP20_20955) lpxK 4820828..4821838 (-) 1011 WP_259495655.1 tetraacyldisaccharide 4'-kinase -
  NYP20_RS20960 (NYP20_20960) - 4821838..4822266 (-) 429 WP_259495657.1 biopolymer transporter ExbD -
  NYP20_RS20965 (NYP20_20965) exbB 4822263..4822898 (-) 636 WP_019689340.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NYP20_RS20970 (NYP20_20970) comA 4822998..4825232 (-) 2235 WP_259495658.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYP20_RS20975 (NYP20_20975) - 4825369..4825884 (+) 516 WP_259495659.1 DUF2062 domain-containing protein -
  NYP20_RS20980 (NYP20_20980) - 4826040..4826819 (-) 780 WP_259495661.1 ABC transporter permease -
  NYP20_RS20985 (NYP20_20985) - 4826816..4827748 (-) 933 WP_259495662.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23001.16 Da        Isoelectric Point: 6.8770

>NTDB_id=726674 NYP20_RS20965 WP_019689340.1 4822263..4822898(-) (exbB) [Pseudomonas sp. N3-W]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMSTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=726674 NYP20_RS20965 WP_019689340.1 4822263..4822898(-) (exbB) [Pseudomonas sp. N3-W]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGTCTGTGGACCCTGCGCGCCAGCCGTGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAGGAAAAACTCAAGGAATTACGCGCCAATTCGCCGCTGGGTGAGATCCTCGCCGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCGCCGTTGCTGGGTCTGTTGGGCACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGAGTACGGGCATGACCACCAACGCTGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCA
TCGGGCCTGATCGTCGGTATCCCGTCGGTATTCTTCCACCGGTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGGAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGTGACCGTGACGTTGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010ST93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834