Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PKHYL_RS16890 Genome accession   NZ_AP019516
Coordinates   3169373..3169531 (-) Length   52 a.a.
NCBI ID   WP_240365685.1    Uniprot ID   A0A7U6KTA1
Organism   Psychrobacter sp. KH172YL61     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3164373..3174531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKHYL_RS16855 (PKHYL_40950) - 3164685..3165434 (+) 750 WP_240365679.1 hypothetical protein -
  PKHYL_RS16860 (PKHYL_40960) - 3165317..3166078 (+) 762 WP_240366562.1 alpha/beta hydrolase -
  PKHYL_RS16865 (PKHYL_40970) - 3166096..3167232 (-) 1137 WP_240365680.1 metallophosphoesterase -
  PKHYL_RS16870 - 3167320..3167529 (-) 210 WP_240365681.1 DUF1731 domain-containing protein -
  PKHYL_RS16875 (PKHYL_40990) - 3167583..3167843 (-) 261 WP_240365682.1 hypothetical protein -
  PKHYL_RS16880 (PKHYL_41000) - 3167824..3168291 (-) 468 WP_240365683.1 NAD-dependent epimerase/dehydratase family protein -
  PKHYL_RS16885 (PKHYL_41020) - 3168616..3169248 (-) 633 WP_240365684.1 Sua5/YciO/YrdC/YwlC family protein -
  PKHYL_RS16890 (PKHYL_41030) dprA 3169373..3169531 (-) 159 WP_240365685.1 hypothetical protein Machinery gene
  PKHYL_RS16895 dprA 3169723..3170629 (-) 907 Protein_3387 DNA-processing protein DprA -
  PKHYL_RS16900 (PKHYL_41060) - 3170687..3171832 (-) 1146 WP_240365686.1 LysM peptidoglycan-binding domain-containing protein -
  PKHYL_RS16905 (PKHYL_41070) thrC 3172121..3173541 (-) 1421 Protein_3389 threonine synthase -

Sequence

Protein


Download         Length: 52 a.a.        Molecular weight: 5871.87 Da        Isoelectric Point: 4.4261

>NTDB_id=72644 PKHYL_RS16890 WP_240365685.1 3169373..3169531(-) (dprA) [Psychrobacter sp. KH172YL61]
MTDIYERLDWHGQDLDALIIATKLSAPQLIGQLMELELMGVISVQGGRYLRV

Nucleotide


Download         Length: 159 bp        

>NTDB_id=72644 PKHYL_RS16890 WP_240365685.1 3169373..3169531(-) (dprA) [Psychrobacter sp. KH172YL61]
TTGACCGACATTTATGAGCGTCTTGACTGGCACGGACAGGATTTAGATGCGCTGATTATCGCAACCAAACTATCCGCGCC
ACAGCTCATTGGACAGCTGATGGAACTTGAACTAATGGGCGTTATCAGTGTGCAAGGCGGACGCTATTTACGTGTATAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(4-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6KTA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baylyi ADP1

56.25

92.308

0.519
  dprA Acinetobacter baumannii strain A118

43.137

98.077

0.423
  dprA Acinetobacter baumannii D1279779

43.137

98.077

0.423

Multiple sequence alignment