Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   P1T45_RS10895 Genome accession   NZ_CP119427
Coordinates   2068266..2068859 (-) Length   197 a.a.
NCBI ID   WP_003108930.1    Uniprot ID   A0ABN0IP23
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063266..2073859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS10865 (P1T45_10870) ruvX 2063283..2063701 (-) 419 Protein_2091 Holliday junction resolvase RuvX -
  P1T45_RS10870 (P1T45_10875) - 2063698..2063967 (-) 270 WP_003104158.1 IreB family regulatory phosphoprotein -
  P1T45_RS10875 (P1T45_10880) spx 2064081..2064479 (-) 399 WP_003104943.1 transcriptional regulator Spx -
  P1T45_RS10880 (P1T45_10885) recA 2064832..2065971 (-) 1140 WP_003102546.1 recombinase RecA -
  P1T45_RS10885 (P1T45_10890) cinA 2066051..2067322 (-) 1272 WP_003108931.1 competence/damage-inducible protein A Machinery gene
  P1T45_RS10890 (P1T45_10895) - 2067711..2068262 (-) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  P1T45_RS10895 (P1T45_10900) ruvA 2068266..2068859 (-) 594 WP_003108930.1 Holliday junction branch migration protein RuvA Machinery gene
  P1T45_RS10900 (P1T45_10905) - 2068861..2070084 (-) 1224 WP_003103803.1 MFS transporter -
  P1T45_RS10905 (P1T45_10910) hexB 2070095..2072071 (-) 1977 WP_003108928.1 DNA mismatch repair endonuclease MutL Machinery gene
  P1T45_RS10910 (P1T45_10915) - 2072168..2073313 (-) 1146 WP_003108925.1 site-specific integrase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21748.20 Da        Isoelectric Point: 5.3214

>NTDB_id=726426 P1T45_RS10895 WP_003108930.1 2068266..2068859(-) (ruvA) [Streptococcus parauberis strain KSP45]
MFDYIKGQLTKITAKYIVVEANGLGYIIYVANPYSFSDSVNQQVTIYLHQVIREDAHLLFGFHTEEEKDVFLKLISVSGI
GPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVEAPKDSAPTSKANAGGNLQLDEAIEALL
ALGYKATELKKIRAFFEGTDETAEQYIKSALKMLMRG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=726426 P1T45_RS10895 WP_003108930.1 2068266..2068859(-) (ruvA) [Streptococcus parauberis strain KSP45]
ATGTTTGATTATATAAAAGGTCAATTAACTAAAATTACTGCTAAATATATTGTGGTCGAAGCTAATGGTTTAGGCTATAT
TATCTATGTTGCTAATCCTTATAGTTTTTCTGACAGTGTCAATCAACAGGTCACTATTTATTTACACCAAGTTATTCGTG
AGGACGCTCACCTCTTATTTGGTTTTCATACAGAAGAGGAAAAAGATGTCTTCTTGAAACTCATCTCAGTTTCTGGAATT
GGTCCTATGACTGCGCTTGCGATTGTCGCCGTCGACGATAATGAAGGCTTAGTCATGGCCATTGACAACAGTGATATCAA
GTACTTAATGAAATTCCCTAAAATTGGTAAGAAAACAGCTCAGCAAATGATTTTAGACTTAGCTGGTAAGTTTGTTGAGG
CACCTAAAGATAGTGCCCCAACAAGTAAAGCAAACGCGGGTGGCAATCTACAACTTGATGAAGCTATTGAAGCACTACTT
GCACTGGGCTACAAAGCAACAGAATTGAAGAAAATTCGAGCTTTCTTTGAAGGAACAGATGAAACAGCTGAGCAGTATAT
TAAATCAGCTCTTAAAATGTTGATGAGAGGTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

66.162

100

0.665
  ruvA Streptococcus pneumoniae D39

66.162

100

0.665
  ruvA Streptococcus pneumoniae TIGR4

65.99

100

0.66
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.58

100

0.426