Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   P1T45_RS09580 Genome accession   NZ_CP119427
Coordinates   1792372..1794414 (-) Length   680 a.a.
NCBI ID   WP_260360212.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787372..1799414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1T45_RS09560 (P1T45_09565) - 1788418..1788870 (+) 453 WP_003103948.1 universal stress protein -
  P1T45_RS09565 (P1T45_09570) - 1788900..1790288 (-) 1389 WP_003107598.1 Cof-type HAD-IIB family hydrolase -
  P1T45_RS09570 (P1T45_09575) - 1790360..1791322 (+) 963 WP_003106022.1 asparaginase -
  P1T45_RS09575 (P1T45_09580) - 1791370..1792287 (-) 918 WP_003107599.1 aldo/keto reductase family oxidoreductase -
  P1T45_RS09580 (P1T45_09585) recG/mmsA 1792372..1794414 (-) 2043 WP_260360212.1 ATP-dependent DNA helicase RecG Machinery gene
  P1T45_RS09585 (P1T45_09590) alr 1794459..1795562 (-) 1104 WP_004347379.1 alanine racemase -
  P1T45_RS09590 (P1T45_09595) acpS 1795562..1795915 (-) 354 WP_003102702.1 holo-ACP synthase -
  P1T45_RS09595 (P1T45_09600) secA 1796014..1798542 (-) 2529 WP_004347376.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 680 a.a.        Molecular weight: 76656.38 Da        Isoelectric Point: 6.5217

>NTDB_id=726410 P1T45_RS09580 WP_260360212.1 1792372..1794414(-) (recG/mmsA) [Streptococcus parauberis strain KSP45]
MNDEGYKRYMNLQSPISELKGLGPKSAEKFHQLEIYTIEDLLIYYPFRYEDFKSKSVFDLQDGDKAVLTGQVVTPATVQY
YGFKRNRLSFKIKQDELVIAVNFFNQPYLADKVEIDKEVAIFGKWDQKKAALTGMKFLMSLEDDLQPVYHTVQGVSQTAL
IKAIKAAFDANVLDQIKENIPALLLQKYKLMPRQDAIRAMHFPKDLREYKLALRRIKFEELFYFQMHLQLLKVANKSESS
GLAINFSQEAVNAVITNLPFPLTGAQNKSLREILADMKSGQHMNRLLQGDVGSGKTVIASLAMYAAYTAGFQSALMVPTE
ILAEQHYDSLSQLFPDLSIAILKSGMKVAERRTALAAIADGSVDMIVGTHALIQDAVQYHHLGLVITDEQHRFGVKQRRI
FREKGDNPDVLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQELDKVLPWIMDEIAQGAQVYVISPLIE
ESEALDLKNAVALESELKDYFKESARIALMHGKMKNEDKDAIMQAFKNKETDLLVSTTVIEVGVNVPNATIMMIMDADRF
GLSQLHQLRGRVGRGHKQSYAILVANPKTDSGKKRMRIMTETTDGFVLAEADLKMRGSGEIFGTRQSGIPEFKTADIVED
YNILEEARRIASEIVSQVAWQEDDRWQAILPNLSEKGSFD

Nucleotide


Download         Length: 2043 bp        

>NTDB_id=726410 P1T45_RS09580 WP_260360212.1 1792372..1794414(-) (recG/mmsA) [Streptococcus parauberis strain KSP45]
ATTAATGATGAGGGGTATAAGAGATATATGAATTTACAATCACCAATTTCAGAATTGAAAGGGCTTGGCCCCAAGTCTGC
AGAAAAATTTCATCAATTAGAGATATATACCATTGAAGACTTATTGATCTATTATCCATTTCGTTATGAAGATTTCAAGA
GTAAGTCAGTTTTCGACTTGCAAGATGGTGATAAGGCTGTCTTAACTGGACAAGTGGTGACGCCAGCAACTGTCCAATAT
TATGGCTTCAAACGGAATCGTCTTTCCTTTAAAATTAAACAAGACGAGCTAGTGATTGCGGTCAATTTCTTTAATCAGCC
CTATCTAGCTGATAAGGTTGAAATTGATAAGGAAGTAGCTATTTTTGGGAAATGGGATCAGAAAAAAGCTGCGCTTACAG
GCATGAAATTTCTGATGTCTCTAGAAGATGATTTGCAACCTGTTTATCACACAGTTCAAGGAGTTAGCCAAACTGCTCTA
ATTAAAGCAATCAAAGCTGCATTTGATGCAAATGTCTTGGACCAAATTAAAGAAAATATTCCAGCATTACTTCTTCAAAA
ATACAAACTGATGCCTCGACAAGATGCAATCAGAGCCATGCATTTTCCAAAAGATTTAAGGGAATACAAATTAGCTCTTC
GTCGCATTAAATTTGAAGAACTCTTTTACTTCCAAATGCATTTACAGTTGTTAAAAGTGGCTAATAAATCTGAAAGCTCA
GGTTTAGCCATCAACTTTTCGCAGGAAGCTGTTAATGCCGTCATTACCAACCTACCTTTTCCATTAACTGGCGCACAAAA
TAAAAGTCTTAGAGAAATCTTAGCCGATATGAAATCGGGCCAACATATGAACCGTCTTTTACAGGGAGATGTTGGTTCAG
GGAAAACAGTTATTGCTAGTCTAGCCATGTATGCCGCATACACTGCCGGCTTTCAATCAGCCTTAATGGTTCCTACAGAA
ATCCTCGCTGAGCAGCATTATGACAGTCTAAGCCAACTATTTCCTGATCTTTCGATAGCTATCTTAAAATCGGGAATGAA
GGTAGCTGAGCGACGAACAGCCTTAGCAGCCATTGCTGACGGATCAGTGGATATGATTGTAGGTACCCACGCGCTGATTC
AAGATGCTGTTCAATATCACCACTTGGGACTAGTAATAACCGATGAACAGCACCGCTTCGGGGTTAAGCAACGACGAATT
TTTAGAGAAAAAGGTGACAATCCAGACGTCCTTATGATGACGGCTACGCCCATTCCTCGTACGCTAGCCATTACCGCCTA
CGGCGAGATGGATGTGTCAATCATTGATGAACTGCCTGCAGGGCGCAAGCCGATTGTGACCCGTTGGGTCAAACATCAAG
AGTTAGATAAGGTTTTGCCTTGGATTATGGATGAAATTGCCCAAGGCGCTCAAGTCTATGTCATCTCTCCTTTGATTGAA
GAGTCCGAGGCACTGGATTTAAAAAATGCTGTCGCTCTTGAGAGTGAGTTGAAAGACTACTTTAAAGAGTCTGCCAGAAT
TGCCTTGATGCACGGGAAAATGAAGAATGAAGACAAGGATGCTATCATGCAAGCCTTTAAGAATAAAGAGACTGATTTGC
TGGTGTCAACGACTGTTATTGAGGTTGGTGTTAACGTTCCGAATGCAACTATAATGATGATAATGGATGCTGACCGTTTT
GGTCTTAGTCAATTACATCAGCTTCGTGGTCGGGTTGGACGTGGTCATAAGCAGTCCTATGCAATTTTAGTGGCAAATCC
AAAAACTGATTCTGGTAAAAAACGGATGAGGATTATGACAGAAACGACAGATGGTTTTGTTTTAGCGGAGGCTGATTTGA
AGATGCGTGGTTCTGGTGAAATTTTTGGAACGCGCCAGTCAGGGATACCAGAATTTAAGACCGCTGATATTGTCGAAGAT
TACAATATCTTAGAAGAAGCTAGAAGAATTGCCAGTGAAATTGTTTCGCAAGTGGCTTGGCAAGAGGATGACCGTTGGCA
AGCTATTCTTCCCAATCTTAGTGAAAAAGGTAGCTTTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(464-575)

DEAD/DEAH box helicase (DEAD)

(265-420)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(602-657)

RecG wedge domain (RecG_wedge)

(18-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.896

98.676

0.69
  recG/mmsA Streptococcus pneumoniae R36A

69.896

98.676

0.69
  recG Bacillus subtilis subsp. subtilis str. 168

48.737

98.971

0.482
  recG Neisseria meningitidis strain C311

38.991

96.176

0.375