Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PX811_RS09285 Genome accession   NZ_CP119404
Coordinates   1925559..1926215 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain MRE162 substr. UK     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1920559..1931215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX811_RS09255 (PX811_001851) dcyD 1921438..1922424 (+) 987 WP_275772361.1 D-cysteine desulfhydrase -
  PX811_RS09260 (PX811_001852) tcyL 1922439..1923107 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  PX811_RS09265 (PX811_001853) tcyN 1923104..1923856 (+) 753 WP_001273008.1 L-cystine ABC transporter ATP-binding protein TcyN -
  PX811_RS09270 (PX811_001854) sdiA 1924086..1924808 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  PX811_RS09275 (PX811_001855) yecF 1924876..1925100 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  PX811_RS09280 (PX811_001856) yecU 1925087..1925263 (-) 177 WP_000590347.1 protein YecU -
  PX811_RS23265 - 1925346..1925417 (-) 72 Protein_1813 transcriptional regulator -
  PX811_RS09285 (PX811_001857) letA 1925559..1926215 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PX811_RS09290 (PX811_001858) uvrC 1926212..1928044 (+) 1833 WP_275772366.1 excinuclease ABC subunit UvrC Machinery gene
  PX811_RS09295 (PX811_001859) pgsA 1928101..1928649 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PX811_RS09315 (PX811_001863) yecA 1929298..1929963 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=726288 PX811_RS09285 WP_000611335.1 1925559..1926215(+) (letA) [Escherichia coli strain MRE162 substr. UK]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=726288 PX811_RS09285 WP_000611335.1 1925559..1926215(+) (letA) [Escherichia coli strain MRE162 substr. UK]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486