Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NYR13_RS07125 Genome accession   NZ_CP103860
Coordinates   1387942..1388388 (+) Length   148 a.a.
NCBI ID   WP_001791635.1    Uniprot ID   -
Organism   Staphylococcus aureus strain R3-8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382942..1393388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR13_RS07090 (NYR13_07090) - 1383436..1383639 (+) 204 WP_000087561.1 YqgQ family protein -
  NYR13_RS07095 (NYR13_07095) - 1383636..1384622 (+) 987 WP_000161314.1 ROK family glucokinase -
  NYR13_RS07100 (NYR13_07100) - 1384622..1384951 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NYR13_RS07105 (NYR13_07105) - 1384948..1385571 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NYR13_RS07110 (NYR13_07110) comGA 1385623..1386597 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  NYR13_RS07115 (NYR13_07115) comGB 1386569..1387639 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYR13_RS07120 (NYR13_07120) comGC 1387653..1387964 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NYR13_RS07125 (NYR13_07125) comGD 1387942..1388388 (+) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYR13_RS07130 (NYR13_07130) comGE 1388375..1388674 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  NYR13_RS07135 (NYR13_07135) comGF 1388592..1389089 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NYR13_RS07140 (NYR13_07140) - 1389186..1389332 (+) 147 WP_001789879.1 hypothetical protein -
  NYR13_RS07145 (NYR13_07145) - 1389322..1389846 (+) 525 WP_001015117.1 shikimate kinase -
  NYR13_RS07150 (NYR13_07150) gcvT 1390005..1391096 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NYR13_RS07155 (NYR13_07155) gcvPA 1391116..1392462 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17199.34 Da        Isoelectric Point: 10.2908

>NTDB_id=726168 NYR13_RS07125 WP_001791635.1 1387942..1388388(+) (comGD) [Staphylococcus aureus strain R3-8]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNNIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=726168 NYR13_RS07125 WP_001791635.1 1387942..1388388(+) (comGD) [Staphylococcus aureus strain R3-8]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAATATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986