Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NYR13_RS07110 Genome accession   NZ_CP103860
Coordinates   1385623..1386597 (+) Length   324 a.a.
NCBI ID   WP_000697228.1    Uniprot ID   A0A0D3Q868
Organism   Staphylococcus aureus strain R3-8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380623..1391597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR13_RS07075 (NYR13_07075) rpmG 1381083..1381232 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  NYR13_RS07080 (NYR13_07080) - 1381441..1381980 (+) 540 WP_000164545.1 5-formyltetrahydrofolate cyclo-ligase -
  NYR13_RS07085 (NYR13_07085) - 1381992..1383455 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  NYR13_RS07090 (NYR13_07090) - 1383436..1383639 (+) 204 WP_000087561.1 YqgQ family protein -
  NYR13_RS07095 (NYR13_07095) - 1383636..1384622 (+) 987 WP_000161314.1 ROK family glucokinase -
  NYR13_RS07100 (NYR13_07100) - 1384622..1384951 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NYR13_RS07105 (NYR13_07105) - 1384948..1385571 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NYR13_RS07110 (NYR13_07110) comGA 1385623..1386597 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  NYR13_RS07115 (NYR13_07115) comGB 1386569..1387639 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYR13_RS07120 (NYR13_07120) comGC 1387653..1387964 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NYR13_RS07125 (NYR13_07125) comGD 1387942..1388388 (+) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYR13_RS07130 (NYR13_07130) comGE 1388375..1388674 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  NYR13_RS07135 (NYR13_07135) comGF 1388592..1389089 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NYR13_RS07140 (NYR13_07140) - 1389186..1389332 (+) 147 WP_001789879.1 hypothetical protein -
  NYR13_RS07145 (NYR13_07145) - 1389322..1389846 (+) 525 WP_001015117.1 shikimate kinase -
  NYR13_RS07150 (NYR13_07150) gcvT 1390005..1391096 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36865.01 Da        Isoelectric Point: 9.0399

>NTDB_id=726165 NYR13_RS07110 WP_000697228.1 1385623..1386597(+) (comGA) [Staphylococcus aureus strain R3-8]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYLF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQPQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
HKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=726165 NYR13_RS07110 WP_000697228.1 1385623..1386597(+) (comGA) [Staphylococcus aureus strain R3-8]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCTTTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACCACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATAAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
CATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3Q868

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.074

100

0.991
  comGA Staphylococcus aureus N315

99.074

100

0.991