Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   P1A16_RS06250 Genome accession   NZ_CP119344
Coordinates   1268492..1270552 (+) Length   686 a.a.
NCBI ID   WP_031589954.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N29CSA11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1263492..1275552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A16_RS06225 (P1A16_06225) rpe 1263963..1264607 (+) 645 WP_000164330.1 ribulose-phosphate 3-epimerase -
  P1A16_RS06230 (P1A16_06230) - 1264614..1265255 (+) 642 WP_000547905.1 thiamine diphosphokinase -
  P1A16_RS06235 (P1A16_06235) rpmB 1265636..1265824 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  P1A16_RS06240 (P1A16_06240) - 1266267..1266641 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  P1A16_RS06245 (P1A16_06245) fakA 1266656..1268302 (+) 1647 WP_000623903.1 fatty acid kinase catalytic subunit FakA -
  P1A16_RS06250 (P1A16_06250) recG 1268492..1270552 (+) 2061 WP_031589954.1 ATP-dependent DNA helicase RecG Machinery gene
  P1A16_RS06255 (P1A16_06255) fapR 1270755..1271327 (+) 573 WP_001548538.1 transcription factor FapR -
  P1A16_RS06260 (P1A16_06260) plsX 1271332..1272318 (+) 987 WP_000239744.1 phosphate acyltransferase PlsX -
  P1A16_RS06265 (P1A16_06265) fabD 1272311..1273237 (+) 927 WP_000047346.1 ACP S-malonyltransferase -
  P1A16_RS06270 (P1A16_06270) fabG 1273230..1273964 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  P1A16_RS06275 (P1A16_06275) - 1274270..1274503 (+) 234 WP_000426914.1 acyl carrier protein -
  P1A16_RS06280 (P1A16_06280) rnc 1274619..1275350 (+) 732 WP_000043237.1 ribonuclease III -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78305.80 Da        Isoelectric Point: 6.0600

>NTDB_id=726037 P1A16_RS06250 WP_031589954.1 1268492..1270552(+) (recG) [Staphylococcus aureus strain N29CSA11]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIQDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASSKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=726037 P1A16_RS06250 WP_031589954.1 1268492..1270552(+) (recG) [Staphylococcus aureus strain N29CSA11]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACAAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACATAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTTGTTGCTGCAATTTGTATGTATGCATTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACGCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTAATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGTGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCTCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGGTTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGCAGTTTTGACTAA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-175)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

DEAD/DEAH box helicase (DEAD)

(267-422)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

52.774

97.23

0.513
  recG/mmsA Streptococcus pneumoniae R6

50.233

94.023

0.472
  recG/mmsA Streptococcus pneumoniae R36A

50.233

94.023

0.472
  recG Neisseria meningitidis strain C311

39.521

97.376

0.385