Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   P1A17_RS08475 Genome accession   NZ_CP119341
Coordinates   1738789..1739391 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain N29CSA02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1733789..1744391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1A17_RS08455 (P1A17_08450) yajC 1735285..1735545 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  P1A17_RS08460 (P1A17_08455) tgt 1735564..1736703 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  P1A17_RS08465 (P1A17_08460) queA 1736726..1737751 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  P1A17_RS08470 (P1A17_08465) ruvB 1737753..1738757 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  P1A17_RS08475 (P1A17_08470) ruvA 1738789..1739391 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  P1A17_RS08480 (P1A17_08475) - 1739405..1739860 (-) 456 WP_000368903.1 ACT domain-containing protein -
  P1A17_RS08485 (P1A17_08480) obgE 1739873..1741165 (-) 1293 WP_000496100.1 GTPase ObgE -
  P1A17_RS08490 (P1A17_08485) rpmA 1741649..1741933 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  P1A17_RS08495 (P1A17_08490) - 1741945..1742265 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  P1A17_RS08500 (P1A17_08495) rplU 1742271..1742579 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  P1A17_RS08505 (P1A17_08500) mreD 1742815..1743345 (-) 531 WP_031590453.1 rod shape-determining protein MreD -
  P1A17_RS08510 (P1A17_08505) mreC 1743345..1744187 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=725978 P1A17_RS08475 WP_000271547.1 1738789..1739391(-) (ruvA) [Staphylococcus aureus strain N29CSA02]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=725978 P1A17_RS08475 WP_000271547.1 1738789..1739391(-) (ruvA) [Staphylococcus aureus strain N29CSA02]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425