Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NYR98_RS08265 Genome accession   NZ_CP103842
Coordinates   1992242..1993696 (-) Length   484 a.a.
NCBI ID   WP_180336569.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. pelargonii strain 22-324     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1987242..1998696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR98_RS08240 (NYR98_08250) - 1987517..1988086 (+) 570 WP_233366553.1 hypothetical protein -
  NYR98_RS08245 - 1988056..1989592 (+) 1537 Protein_1616 hypothetical protein -
  NYR98_RS08250 (NYR98_08265) pilB 1989627..1991363 (+) 1737 WP_168958954.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NYR98_RS08255 (NYR98_08270) - 1991372..1991989 (-) 618 WP_168958955.1 Fic family protein -
  NYR98_RS08260 (NYR98_08275) - 1991986..1992168 (-) 183 WP_074066024.1 YhfG family protein -
  NYR98_RS08265 (NYR98_08280) pilR 1992242..1993696 (-) 1455 WP_180336569.1 sigma-54 dependent transcriptional regulator Regulator
  NYR98_RS08270 (NYR98_08285) - 1993782..1995395 (-) 1614 WP_168958956.1 HAMP domain-containing sensor histidine kinase -
  NYR98_RS08275 (NYR98_08290) sucC 1995628..1996797 (+) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  NYR98_RS08280 (NYR98_08295) sucD 1996822..1997697 (+) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52506.18 Da        Isoelectric Point: 6.5126

>NTDB_id=725915 NYR98_RS08265 WP_180336569.1 1992242..1993696(-) (pilR) [Xanthomonas hortorum pv. pelargonii strain 22-324]
MGPNPDDNCRLSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISAS
DLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=725915 NYR98_RS08265 WP_180336569.1 1992242..1993696(-) (pilR) [Xanthomonas hortorum pv. pelargonii strain 22-324]
GTGGGCCCAAACCCCGACGACAATTGTCGTCTGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CTTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACCG
CGGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTCTGCCTGACCGACATGCGCCTGCCCGAT
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAGTATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGTTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCACCTCCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTGGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAAGTCGCGCGCAGCCAGGCGCCGGTTTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCATGAACAAGGCGCACGCGCAGCCGGCCCGTTCG
TGCCTGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCT
GCAGATGCAGGTCAAACTACTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCCTCTACCGAATCGCTGGTGG
ACGTGCGCATTCTCTCGGCCACCCACAAGGACCTCGGTGACCTGGTCTCCGACGGCCGTTTCCGCCACGACCTGTACTAT
CGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCACGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCAATCCGCGCTCGACGCGCTGGACACATACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGC
GATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGT
GGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGG
AGGAGAATCGTTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGTGCGCTGCGCTACAAGCTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471