NTDB

Overview

Name	sxy/tfoX	Type	Regulator
Locus tag	NYR63_RS09665	Genome accession	NZ_CP103834
Coordinates	2066484..2067140 (-)	Length	218 a.a.
NCBI ID	WP_279457328.1	Uniprot ID	-
Organism	Actinobacillus genomosp. 1 strain 3216
Function	positive regulator of competence gene (predicted from homology) Competence regulation

Genomic Context

Location: 2061484..2072140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR63_RS09645 (NYR63_09640)	nanA	2061875..2062753 (+)	879	WP_039198256.1	N-acetylneuraminate lyase	-
NYR63_RS09650 (NYR63_09645)	nagB	2062799..2063602 (+)	804	WP_279457326.1	glucosamine-6-phosphate deaminase	-
NYR63_RS09655 (NYR63_09650)	nagA	2063654..2064805 (+)	1152	WP_279457327.1	N-acetylglucosamine-6-phosphate deacetylase	-
NYR63_RS09660 (NYR63_09655)	fumC	2064934..2066328 (-)	1395	WP_012263385.1	class II fumarate hydratase	-
NYR63_RS09665 (NYR63_09660)	sxy/tfoX	2066484..2067140 (-)	657	WP_279457328.1	TfoX/Sxy family DNA transformation protein	Regulator
NYR63_RS09670 (NYR63_09665)	rpsJ	2067553..2067864 (+)	312	WP_001181005.1	30S ribosomal protein S10	-
NYR63_RS09675 (NYR63_09670)	rplC	2067890..2068516 (+)	627	WP_005599280.1	50S ribosomal protein L3	-
NYR63_RS09680 (NYR63_09675)	rplD	2068532..2069134 (+)	603	WP_005599282.1	50S ribosomal protein L4	-
NYR63_RS09685 (NYR63_09680)	rplW	2069131..2069436 (+)	306	WP_005599290.1	50S ribosomal protein L23	-
NYR63_RS09690 (NYR63_09685)	rplB	2069457..2070278 (+)	822	WP_014992368.1	50S ribosomal protein L2	-
NYR63_RS09695 (NYR63_09690)	rpsS	2070306..2070581 (+)	276	WP_005539416.1	30S ribosomal protein S19	-
NYR63_RS09700 (NYR63_09695)	rplV	2070592..2070924 (+)	333	WP_010945717.1	50S ribosomal protein L22	-
NYR63_RS09705 (NYR63_09700)	rpsC	2070943..2071650 (+)	708	WP_005599293.1	30S ribosomal protein S3	-
NYR63_RS09710 (NYR63_09705)	rplP	2071664..2072074 (+)	411	WP_005599294.1	50S ribosomal protein L16	-

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 25649.00 Da Isoelectric Point: 9.9262

                                >NTDB_id=725834 NYR63_RS09665 WP_279457328.1 2066484..2067140(-) (sxy/tfoX) [Actinobacillus genomosp. 1 strain 3216]

MAISPKKFQYLKEIFSPIGEINFKSYFSYLGIFKDDTMFALYDHKNDKLYLRKSDRFYSDIIRTIPVHFLIDRRIGKQQS

HIFYFIPSSIIHNLHSYTHWILSSIEEYQTAKAKLISQNKNKIRLLPNLNINIERLLARVEIYTVDDLKNVGIIDAFVKL

ILLGLEVTELLLFKLYGALEHKYIYMLSKREKQSLLVEADLALYNAGLRKRFTISSSN

Nucleotide

Download Length: 657 bp

                                >NTDB_id=725834 NYR63_RS09665 WP_279457328.1 2066484..2067140(-) (sxy/tfoX) [Actinobacillus genomosp. 1 strain 3216]

ATGGCAATATCCCCAAAAAAGTTCCAATATCTTAAGGAGATTTTTAGTCCGATTGGAGAAATCAACTTCAAAAGCTATTT

TTCTTACTTAGGAATATTTAAAGACGATACTATGTTCGCCCTCTATGATCATAAAAATGATAAGTTATACTTAAGAAAAT

CAGACCGATTTTATTCAGATATAATACGCACGATACCGGTACATTTTCTTATCGACCGCCGTATCGGCAAACAGCAATCT

CATATTTTTTATTTCATACCTTCTTCTATTATTCATAATCTTCATTCATATACGCACTGGATTCTGTCTTCTATCGAAGA

ATATCAAACGGCAAAAGCAAAGCTGATTTCTCAAAATAAAAATAAAATTCGTCTCCTTCCCAATTTAAATATTAATATCG

AAAGATTACTGGCACGTGTTGAAATTTATACGGTAGACGACCTGAAAAACGTGGGGATTATAGACGCTTTCGTCAAACTG

ATACTGCTCGGTTTAGAAGTAACAGAATTACTGCTCTTCAAGCTTTACGGTGCTCTTGAACACAAATATATCTATATGTT

ATCTAAACGGGAAAAACAATCTTTACTGGTTGAAGCTGATTTGGCTCTTTATAATGCGGGTCTGCGTAAACGCTTCACTA

TCTCATCTAGCAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(13-107)

TfoX C-terminal domain (TfoX_C)

(120-198)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
sxy/tfoX	Actinobacillus pleuropneumoniae strain HS143	90.826	100	0.908
sxy/tfoX	Actinobacillus suis H91-0380	60.465	98.624	0.596
sxy/tfoX	Glaesserella parasuis strain SC1401	40.67	95.872	0.39

Detailed information NTG0725834