Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR63_RS04785 Genome accession   NZ_CP103834
Coordinates   1058627..1060006 (+) Length   459 a.a.
NCBI ID   WP_279458429.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain 3216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1053627..1065006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR63_RS04755 (NYR63_04750) yacG 1053909..1054097 (-) 189 WP_279458423.1 DNA gyrase inhibitor YacG -
  NYR63_RS04760 (NYR63_04755) coaE 1054079..1054717 (-) 639 WP_279458424.1 dephospho-CoA kinase -
  NYR63_RS04765 (NYR63_04760) - 1054738..1055382 (-) 645 WP_347710369.1 prepilin peptidase -
  NYR63_RS04770 (NYR63_04765) - 1055403..1056605 (-) 1203 WP_279458426.1 type II secretion system F family protein -
  NYR63_RS04775 (NYR63_04770) pilB 1056589..1057983 (-) 1395 WP_279458427.1 GspE/PulE family protein Machinery gene
  NYR63_RS04780 (NYR63_04775) pilA 1058001..1058447 (-) 447 WP_279458428.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR63_RS04785 (NYR63_04780) radA 1058627..1060006 (+) 1380 WP_279458429.1 DNA repair protein RadA Machinery gene
  NYR63_RS04790 (NYR63_04785) - 1060050..1060283 (-) 234 WP_115589814.1 YgjV family protein -
  NYR63_RS04795 (NYR63_04790) folA 1060413..1060901 (-) 489 WP_279458430.1 type 3 dihydrofolate reductase -
  NYR63_RS04800 (NYR63_04795) proB 1060988..1062079 (+) 1092 WP_279458431.1 glutamate 5-kinase -
  NYR63_RS04805 (NYR63_04800) - 1062095..1062871 (+) 777 WP_279458432.1 TSUP family transporter -
  NYR63_RS04810 (NYR63_04805) nth 1062872..1063504 (+) 633 WP_267978577.1 endonuclease III -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49716.29 Da        Isoelectric Point: 7.9094

>NTDB_id=725819 NYR63_RS04785 WP_279458429.1 1058627..1060006(+) (radA) [Actinobacillus genomosp. 1 strain 3216]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISAKESNKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAKDLPTLYVTGEESLQQVAMRANRLGLPTENLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHCIDASI
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRSLPQDLVVFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKPIKGMEVFTVKKLSDALDILGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725819 NYR63_RS04785 WP_279458429.1 1058627..1060006(+) (radA) [Actinobacillus genomosp. 1 strain 3216]
ATGGCAAAGGCACCCAAAACAGCTTATGTATGTAATGATTGCGGCGCGGAATATTCTCGCTGGATGGGACAATGTAAAGA
GTGCAAGGCATGGAATACGATTAGCGAAGTTCGCTTAATCTCAGCTAAAGAATCAAATAAAAACGACCGCTTCAGCGGTT
ATGCCGGGGAGACCTCCGGCAAAGTACAAACTTTATCTGAAATCAGCTTACAAGAAGTCCCTCGTTTCAGCAGCGGTTTT
AATGAACTTGATCGCGTACTGGGCGGAGGTGTTGTACCGGGTTCGGCGATTTTAATCGGCGGTCATCCCGGTGCCGGTAA
ATCCACCTTGCTTCTGCAAGTAATGTGCGGCTTAGCTAAAGATTTACCAACGCTTTATGTCACCGGTGAAGAATCCTTAC
AACAGGTGGCGATGAGGGCTAACCGTTTAGGCTTACCGACCGAAAATTTAAAAATGCTTTCCGAAACCTCCGTTGAGCAT
ATTTGTAATATCGCCGACCAAGAAAAACCGAAAATTATGGTGATAGACTCTATCCAAGTGATGCACCTTGCCGATATTCA
ATCTTCTCCCGGCAGTGTTTCTCAAGTGCGGGAGTGTGCTTCGTTTTTAACTCGCTATGCGAAAACACGGCAAGTAGCGA
TTATTATGGTCGGACACGTAACCAAAGACGGTACGCTCGCCGGCCCTAAAGTATTAGAGCATTGTATCGATGCGTCAATT
TTACTGGAAGGCGAATCGGATTCTCGATTCCGTACCTTACGCAGCCAGAAAAACCGTTTCGGTGCGGTCAATGAATTGGG
CGTATTTGCTATGACCGAACAAGGTTTACGAGAAGTAAAAAATCCTTCTGCGATTTTCCTTAGCCGTAGTGATGAGCAAA
CACCGGGCAGTTCCGTAATGGTACTTTGGGAAGGAACCCGTCCGTTATTAGTTGAAATTCAAGCGTTAGTCGATCACTCT
ATGTTAGCCAACCCTCGTCGTGTTGCGGTCGGATTGGATCACAACCGTTTATCCTTATTACTTGCAGTATTACATCGGCA
TGGCGGTTTGCAAATGTCGGATCAAGATGTGTTCGTCAATGTAGTCGGTGGGGTAAAAGTGACTGAAACCAGTGCCGATC
TTGCGTTAATTTTGGCTTTAATTTCCAGTTTTAGAAATCGCTCGTTACCACAAGATTTAGTGGTATTCGGCGAAGTCGGG
TTAGCCGGTGAAATTCGCCCGGTACCGAGCGGTCAGGAACGTATTAGCGAAGCGGCGAAACACGGCTTTAAACGCGCGAT
CATTCCGCATGGCAACGCCCCCAAAAAACCGATTAAAGGCATGGAAGTGTTTACCGTTAAAAAATTAAGCGACGCACTGG
ATATCCTCGGCAATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

44.273

98.911

0.438
  radA Streptococcus mitis SK321

44.053

98.911

0.436
  radA Streptococcus pneumoniae Rx1

45.349

93.682

0.425
  radA Streptococcus pneumoniae D39

45.349

93.682

0.425
  radA Streptococcus pneumoniae R6

45.349

93.682

0.425
  radA Streptococcus pneumoniae TIGR4

45.349

93.682

0.425