Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR89_RS08420 Genome accession   NZ_CP103833
Coordinates   1761777..1762421 (+) Length   214 a.a.
NCBI ID   WP_279445465.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1756777..1767421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS08375 (NYR89_08375) rplP 1756843..1757254 (-) 412 Protein_1620 50S ribosomal protein L16 -
  NYR89_RS08380 (NYR89_08380) rpsC 1757268..1757975 (-) 708 WP_279445460.1 30S ribosomal protein S3 -
  NYR89_RS08385 (NYR89_08385) rplV 1757994..1758326 (-) 333 WP_279445461.1 50S ribosomal protein L22 -
  NYR89_RS08390 (NYR89_08390) rpsS 1758337..1758612 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR89_RS08395 (NYR89_08395) rplB 1758640..1759461 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR89_RS08400 (NYR89_08400) rplW 1759482..1759787 (-) 306 WP_279445462.1 50S ribosomal protein L23 -
  NYR89_RS08405 (NYR89_08405) rplD 1759784..1760386 (-) 603 WP_279445463.1 50S ribosomal protein L4 -
  NYR89_RS08410 (NYR89_08410) rplC 1760402..1761028 (-) 627 WP_005599280.1 50S ribosomal protein L3 -
  NYR89_RS08415 (NYR89_08415) rpsJ 1761054..1761365 (-) 312 WP_279445464.1 30S ribosomal protein S10 -
  NYR89_RS08420 (NYR89_08420) sxy/tfoX 1761777..1762421 (+) 645 WP_279445465.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR89_RS08425 (NYR89_08425) fumC 1762586..1763980 (+) 1395 Protein_1630 class II fumarate hydratase -
  NYR89_RS08430 (NYR89_08430) - 1764099..1765166 (-) 1068 WP_279445466.1 MFS transporter -
  NYR89_RS08435 (NYR89_08435) murJ 1765188..1766756 (-) 1569 WP_279445467.1 murein biosynthesis integral membrane protein MurJ -
  NYR89_RS08440 (NYR89_08440) rpsT 1767129..1767394 (+) 266 Protein_1633 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 25141.25 Da        Isoelectric Point: 9.5523

>NTDB_id=725807 NYR89_RS08420 WP_279445465.1 1761777..1762421(+) (sxy/tfoX) [Actinobacillus arthritidis strain CCUG24862]
MAISTKKLQDLKDLFSTLGHISFRNYFSYIGIFKDNTMFALYDQKNEAIYIRKSIKYYPEISQTIPVHFLVDRRIGSQQS
RIFYHLPQIIIDTIDTYLHWIQSAIEEYQVTKTKLEDQNKNKIRLLPNMNINIERLLSRIEIYTVDDLNSVGIINVFVKL
ISQGVEVGELLLFKLYGAIKHKYVYMISEQEKRTLLLEADSALYSAGLRKRFTI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=725807 NYR89_RS08420 WP_279445465.1 1761777..1762421(+) (sxy/tfoX) [Actinobacillus arthritidis strain CCUG24862]
ATGGCAATATCAACAAAAAAGTTACAAGATTTAAAAGATCTGTTTTCTACACTTGGACATATCAGTTTTAGAAACTATTT
TTCTTATATCGGTATTTTTAAAGATAATACGATGTTTGCACTCTACGATCAGAAAAATGAGGCAATTTATATCCGTAAAT
CCATAAAATATTATCCTGAAATTTCTCAGACGATTCCGGTTCATTTTTTAGTAGACCGCCGTATAGGTTCACAACAATCA
CGTATTTTCTATCATCTTCCCCAAATCATTATCGATACTATTGATACATACTTACATTGGATTCAGTCTGCGATTGAAGA
ATATCAAGTGACAAAAACAAAATTGGAAGACCAAAATAAGAATAAAATTCGCTTATTACCGAATATGAATATTAATATAG
AGAGACTGCTCTCTCGTATTGAAATTTATACTGTTGATGATCTAAATAGTGTAGGTATTATCAACGTCTTCGTTAAGCTT
ATTTCGCAAGGTGTAGAAGTCGGTGAATTATTACTCTTTAAACTTTACGGAGCGATTAAGCATAAATATGTTTATATGAT
TTCTGAACAAGAAAAACGCACATTGTTACTTGAAGCAGATTCAGCATTATATAGTGCTGGTTTACGTAAACGCTTTACTA
TCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(13-107)

TfoX C-terminal domain (TfoX_C)

(120-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

69.159

100

0.692
  sxy/tfoX Actinobacillus suis H91-0380

59.813

100

0.598
  sxy/tfoX Glaesserella parasuis strain SC1401

37.736

99.065

0.374