Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR87_RS08430 Genome accession   NZ_CP103831
Coordinates   1838834..1839469 (+) Length   211 a.a.
NCBI ID   WP_275218280.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 1812     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833834..1844469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR87_RS08385 (NYR87_08380) rplP 1833903..1834313 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR87_RS08390 (NYR87_08385) rpsC 1834327..1835031 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR87_RS08395 (NYR87_08390) rplV 1835050..1835382 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR87_RS08400 (NYR87_08395) rpsS 1835393..1835668 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR87_RS08405 (NYR87_08400) rplB 1835696..1836517 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR87_RS08410 (NYR87_08405) rplW 1836538..1836843 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR87_RS08415 (NYR87_08410) rplD 1836840..1837442 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR87_RS08420 (NYR87_08415) rplC 1837458..1838084 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR87_RS08425 (NYR87_08420) rpsJ 1838110..1838421 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR87_RS08430 (NYR87_08425) sxy/tfoX 1838834..1839469 (+) 636 WP_275218280.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR87_RS08435 (NYR87_08430) rpsT 1839528..1839791 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR87_RS08440 (NYR87_08435) murJ 1840204..1841772 (+) 1569 WP_279480581.1 murein biosynthesis integral membrane protein MurJ -
  NYR87_RS08445 (NYR87_08440) - 1841792..1842859 (+) 1068 WP_279480583.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24629.90 Da        Isoelectric Point: 9.9799

>NTDB_id=725782 NYR87_RS08430 WP_275218280.1 1838834..1839469(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 1812]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLDEIAQTISMHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKTKIENQNQNKIRMLPNLNISIERLLAKVGIHTVADLKSMGAISVFVRLIQQ
GLEATPLLLFKLHGAIQYKYIYMLTEQEKQNLLIEADNALYQAGLRKRFIL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725782 NYR87_RS08430 WP_275218280.1 1838834..1839469(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 1812]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
TTCGTTCTTAGGTATCTTTAAAGAAGATACTATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAATCGATGC
AATATTTAGATGAAATAGCTCAAACAATATCCATGCACTTTCTGGTTGACCGCCATATCAGTAATCGTTCCAAAATCTTT
TATCTCCTCCCCCCTTCAATTCTCAATAATCTACAAACCTATTCCCATTGGATATCTTCAGCTATTCTCGAATATCAACA
ATCTAAAACAAAAATTGAAAATCAGAATCAGAATAAAATTCGTATGCTGCCCAACTTAAATATCAGTATTGAAAGGCTAC
TCGCTAAAGTTGGTATTCATACAGTAGCGGATCTAAAAAGTATGGGTGCAATTAGCGTTTTTGTACGTCTAATCCAGCAA
GGTTTGGAAGCTACGCCACTATTATTATTTAAACTACATGGCGCGATTCAATATAAATATATTTATATGCTGACCGAACA
AGAGAAACAGAATTTACTTATTGAAGCTGACAATGCGCTTTATCAGGCAGGATTACGGAAGAGATTCATACTATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-102)

TfoX C-terminal domain (TfoX_C)

(117-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

89.1

100

0.891
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

61.321

100

0.616
  sxy/tfoX Glaesserella parasuis strain SC1401

40

99.526

0.398