Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR83_RS08390 Genome accession   NZ_CP103828
Coordinates   1847759..1848394 (+) Length   211 a.a.
NCBI ID   WP_278226329.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3009     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842759..1853394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR83_RS08345 (NYR83_08345) rplP 1842825..1843235 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR83_RS08350 (NYR83_08350) rpsC 1843249..1843953 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR83_RS08355 (NYR83_08355) rplV 1843972..1844304 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR83_RS08360 (NYR83_08360) rpsS 1844315..1844590 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR83_RS08365 (NYR83_08365) rplB 1844618..1845439 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR83_RS08370 (NYR83_08370) rplW 1845460..1845765 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR83_RS08375 (NYR83_08375) rplD 1845762..1846364 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR83_RS08380 (NYR83_08380) rplC 1846380..1847006 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR83_RS08385 (NYR83_08385) rpsJ 1847032..1847343 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR83_RS08390 (NYR83_08390) sxy/tfoX 1847759..1848394 (+) 636 WP_278226329.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR83_RS08395 (NYR83_08395) rpsT 1848453..1848716 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR83_RS08400 (NYR83_08400) murJ 1849124..1850692 (+) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  NYR83_RS08405 (NYR83_08405) - 1850712..1851779 (+) 1068 WP_279443075.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24553.70 Da        Isoelectric Point: 9.6735

>NTDB_id=725702 NYR83_RS08390 WP_278226329.1 1847759..1848394(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 3009]
MKYTAEELEKLKALLSPLGEVAFKPYFSFLGIFKDDTMFALYKNQQLYVRKSVQYLEEIAQTISIHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFIP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725702 NYR83_RS08390 WP_278226329.1 1847759..1848394(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 3009]
ATGAAATACACAGCAGAGGAGCTAGAAAAACTTAAAGCATTATTATCCCCTCTCGGGGAGGTCGCCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAGACGATACCATGTTTGCTCTCTACAAAAATCAACAGTTATACGTACGCAAATCGGTTC
AATACTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGTCACATCAGCAATCGTTCTAAAATCTTT
TATCTTCTTCCTCCTTCCATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGCTGGATTACGGAAAAGATTCATACCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

90.952

99.526

0.905
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

64.151

100

0.645
  sxy/tfoX Glaesserella parasuis strain SC1401

41.905

99.526

0.417