Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR81_RS08625 Genome accession   NZ_CP103826
Coordinates   1849694..1850329 (+) Length   211 a.a.
NCBI ID   WP_279479230.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3113     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844694..1855329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR81_RS08580 (NYR81_08580) rplP 1844763..1845173 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR81_RS08585 (NYR81_08585) rpsC 1845187..1845891 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR81_RS08590 (NYR81_08590) rplV 1845910..1846242 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR81_RS08595 (NYR81_08595) rpsS 1846253..1846528 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR81_RS08600 (NYR81_08600) rplB 1846556..1847377 (-) 822 WP_279479225.1 50S ribosomal protein L2 -
  NYR81_RS08605 (NYR81_08605) rplW 1847398..1847703 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR81_RS08610 (NYR81_08610) rplD 1847700..1848302 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR81_RS08615 (NYR81_08615) rplC 1848318..1848944 (-) 627 WP_279479227.1 50S ribosomal protein L3 -
  NYR81_RS08620 (NYR81_08620) rpsJ 1848970..1849281 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR81_RS08625 (NYR81_08625) sxy/tfoX 1849694..1850329 (+) 636 WP_279479230.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR81_RS08630 (NYR81_08630) rpsT 1850388..1850651 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR81_RS08635 (NYR81_08635) murJ 1851058..1852626 (+) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  NYR81_RS08640 (NYR81_08640) - 1852646..1853713 (+) 1068 WP_279441782.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24689.91 Da        Isoelectric Point: 9.8102

>NTDB_id=725654 NYR81_RS08625 WP_279479230.1 1849694..1850329(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3113]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLEEIAQTISIHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQVGLRKRFIP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725654 NYR81_RS08625 WP_279479230.1 1849694..1850329(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3113]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
CTCGTTCTTAGGTATCTTTAAAGAAGATACCATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAGTCGATGC
AATATTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGCCATATCAGCAATCGTTCTAAAATCTTT
TATCTTCTTCCTCCTTCCATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGTCGGATTACGGAAAAGATTCATACCGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-102)

TfoX C-terminal domain (TfoX_C)

(117-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

91.905

99.526

0.915
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.208

100

0.635
  sxy/tfoX Glaesserella parasuis strain SC1401

40

99.526

0.398