Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR79_RS02660 Genome accession   NZ_CP103824
Coordinates   557251..557886 (-) Length   211 a.a.
NCBI ID   WP_279455210.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3524     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 552251..562886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR79_RS02645 (NYR79_02645) - 553866..554933 (-) 1068 WP_039198210.1 MFS transporter -
  NYR79_RS02650 (NYR79_02650) murJ 554953..556521 (-) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  NYR79_RS02655 (NYR79_02655) rpsT 556929..557192 (+) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR79_RS02660 (NYR79_02660) sxy/tfoX 557251..557886 (-) 636 WP_279455210.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR79_RS02665 (NYR79_02665) rpsJ 558299..558610 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR79_RS02670 (NYR79_02670) rplC 558636..559262 (+) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR79_RS02675 (NYR79_02675) rplD 559278..559880 (+) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR79_RS02680 (NYR79_02680) rplW 559877..560182 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR79_RS02685 (NYR79_02685) rplB 560203..561024 (+) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR79_RS02690 (NYR79_02690) rpsS 561052..561327 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR79_RS02695 (NYR79_02695) rplV 561338..561670 (+) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR79_RS02700 (NYR79_02700) rpsC 561689..562393 (+) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR79_RS02705 (NYR79_02705) rplP 562407..562817 (+) 411 WP_005625160.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24586.87 Da        Isoelectric Point: 9.8828

>NTDB_id=725592 NYR79_RS02660 WP_279455210.1 557251..557886(-) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLDEIAQTISMHFLVDLHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKTKIENQNQNKIRMLPNLNISIERLLAKVGIHTVADLKSMGAISVFVRLIQQ
GLEATPLLLFKLHGAIQYKYIYMLTEQEKQNLLIEADNALYQAGLRKRFIL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725592 NYR79_RS02660 WP_279455210.1 557251..557886(-) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
TTCGTTCTTAGGTATCTTTAAAGAAGATACTATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAATCGATGC
AATATTTAGATGAAATAGCTCAAACAATATCCATGCACTTTCTGGTTGACCTCCATATCAGTAATCGTTCCAAAATCTTT
TATCTCCTCCCCCCTTCAATTCTCAATAATCTACAAACCTATTCCCATTGGATATCTTCAGCTATTCTCGAATATCAACA
ATCTAAAACAAAAATTGAAAATCAGAATCAGAATAAAATTCGTATGCTGCCCAACTTAAATATCAGTATTGAAAGGCTAC
TCGCTAAAGTTGGTATTCATACAGTAGCGGATCTAAAAAGTATGGGTGCAATTAGCGTTTTTGTACGTCTAATCCAGCAA
GGTTTGGAAGCTACGCCACTATTATTATTTAAACTACATGGCGCGATTCAATATAAATATATTTATATGCTGACCGAACA
AGAGAAACAGAATTTACTTATTGAAGCTGACAATGCGCTTTATCAGGCAGGATTACGGAAGAGATTCATACTATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

88.626

100

0.886
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

60.849

100

0.611
  sxy/tfoX Glaesserella parasuis strain SC1401

40

99.526

0.398