Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR76_RS08585 Genome accession   NZ_CP103821
Coordinates   1874409..1875044 (+) Length   211 a.a.
NCBI ID   WP_279478181.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3750     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1869409..1880044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR76_RS08540 (NYR76_08540) rplP 1869475..1869885 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR76_RS08545 (NYR76_08545) rpsC 1869899..1870603 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR76_RS08550 (NYR76_08550) rplV 1870622..1870954 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR76_RS08555 (NYR76_08555) rpsS 1870965..1871240 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR76_RS08560 (NYR76_08560) rplB 1871268..1872089 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR76_RS08565 (NYR76_08565) rplW 1872110..1872415 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR76_RS08570 (NYR76_08570) rplD 1872412..1873014 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR76_RS08575 (NYR76_08575) rplC 1873030..1873656 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR76_RS08580 (NYR76_08580) rpsJ 1873682..1873993 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR76_RS08585 (NYR76_08585) sxy/tfoX 1874409..1875044 (+) 636 WP_279478181.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR76_RS08590 (NYR76_08590) rpsT 1875103..1875366 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR76_RS08595 (NYR76_08595) murJ 1875773..1877341 (+) 1569 WP_279436938.1 murein biosynthesis integral membrane protein MurJ -
  NYR76_RS08600 (NYR76_08600) - 1877361..1878428 (+) 1068 WP_279436939.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24595.71 Da        Isoelectric Point: 9.6735

>NTDB_id=725550 NYR76_RS08585 WP_279478181.1 1874409..1875044(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 3750]
MKYTAEELEKLKALLSPLGEVAFKPYFSFLGIFKDDTMFALYKNQQLYVRKSVQYLEEIAQTISIHFLVDRHISNRSKIF
YHLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFMP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725550 NYR76_RS08585 WP_279478181.1 1874409..1875044(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 3750]
ATGAAATACACAGCAGAGGAGCTAGAAAAACTTAAAGCATTATTATCCCCTCTCGGGGAGGTCGCCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAGACGATACCATGTTTGCTCTCTACAAAAATCAACAGTTATACGTACGCAAATCGGTTC
AATACTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGCCATATCAGCAATCGTTCTAAAATCTTT
TATCATCTTCCTCCTTCTATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGCTGGATTACGGAAAAGATTCATGCCGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

90.952

99.526

0.905
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.679

100

0.64
  sxy/tfoX Glaesserella parasuis strain SC1401

41.429

99.526

0.412