Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR75_RS08395 Genome accession   NZ_CP103820
Coordinates   1808943..1809578 (+) Length   211 a.a.
NCBI ID   WP_279455210.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3820     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803943..1814578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR75_RS08350 (NYR75_08355) rplP 1804012..1804422 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR75_RS08355 (NYR75_08360) rpsC 1804436..1805140 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR75_RS08360 (NYR75_08365) rplV 1805159..1805491 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR75_RS08365 (NYR75_08370) rpsS 1805502..1805777 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR75_RS08370 (NYR75_08375) rplB 1805805..1806626 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR75_RS08375 (NYR75_08380) rplW 1806647..1806952 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR75_RS08380 (NYR75_08385) rplD 1806949..1807551 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR75_RS08385 (NYR75_08390) rplC 1807567..1808193 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR75_RS08390 (NYR75_08395) rpsJ 1808219..1808530 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR75_RS08395 (NYR75_08400) sxy/tfoX 1808943..1809578 (+) 636 WP_279455210.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR75_RS08400 (NYR75_08405) rpsT 1809637..1809900 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR75_RS08405 (NYR75_08410) murJ 1810304..1811872 (+) 1569 WP_279436938.1 murein biosynthesis integral membrane protein MurJ -
  NYR75_RS08410 (NYR75_08415) - 1811892..1812959 (+) 1068 WP_279436939.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24586.87 Da        Isoelectric Point: 9.8828

>NTDB_id=725523 NYR75_RS08395 WP_279455210.1 1808943..1809578(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3820]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLDEIAQTISMHFLVDLHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKTKIENQNQNKIRMLPNLNISIERLLAKVGIHTVADLKSMGAISVFVRLIQQ
GLEATPLLLFKLHGAIQYKYIYMLTEQEKQNLLIEADNALYQAGLRKRFIL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725523 NYR75_RS08395 WP_279455210.1 1808943..1809578(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3820]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
TTCGTTCTTAGGTATCTTTAAAGAAGATACTATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAATCGATGC
AATATTTAGATGAAATAGCTCAAACAATATCCATGCACTTTCTGGTTGACCTCCATATCAGTAATCGTTCCAAAATCTTT
TATCTCCTCCCCCCTTCAATTCTCAATAATCTACAAACCTATTCCCATTGGATATCTTCAGCTATTCTCGAATATCAACA
ATCTAAAACAAAAATTGAAAATCAGAATCAGAATAAAATTCGTATGCTGCCCAACTTAAATATCAGTATTGAAAGGCTAC
TCGCTAAAGTTGGTATTCATACAGTAGCGGATCTAAAAAGTATGGGTGCAATTAGCGTTTTTGTACGTCTAATCCAGCAA
GGTTTGGAAGCTACGCCACTATTATTATTTAAACTACATGGCGCGATTCAATATAAATATATTTATATGCTGACCGAACA
AGAGAAACAGAATTTACTTATTGAAGCTGACAATGCGCTTTATCAGGCAGGATTACGGAAGAGATTCATACTATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

88.626

100

0.886
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

60.849

100

0.611
  sxy/tfoX Glaesserella parasuis strain SC1401

40

99.526

0.398