Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR74_RS08075 Genome accession   NZ_CP103819
Coordinates   1728698..1729333 (-) Length   211 a.a.
NCBI ID   WP_279453234.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3873     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723698..1734333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR74_RS08060 (NYR74_08060) - 1725317..1726384 (-) 1068 WP_279436939.1 MFS transporter -
  NYR74_RS08065 (NYR74_08065) murJ 1726404..1727972 (-) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  NYR74_RS08070 (NYR74_08070) rpsT 1728376..1728639 (+) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR74_RS08075 (NYR74_08075) sxy/tfoX 1728698..1729333 (-) 636 WP_279453234.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR74_RS08080 (NYR74_08080) rpsJ 1729746..1730057 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR74_RS08085 (NYR74_08085) rplC 1730083..1730709 (+) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR74_RS08090 (NYR74_08090) rplD 1730725..1731327 (+) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR74_RS08095 (NYR74_08095) rplW 1731324..1731629 (+) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR74_RS08100 (NYR74_08100) rplB 1731650..1732471 (+) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR74_RS08105 (NYR74_08105) rpsS 1732499..1732774 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR74_RS08110 (NYR74_08110) rplV 1732785..1733117 (+) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR74_RS08115 (NYR74_08115) rpsC 1733136..1733840 (+) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR74_RS08120 (NYR74_08120) rplP 1733854..1734264 (+) 411 WP_005625160.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24599.83 Da        Isoelectric Point: 9.9799

>NTDB_id=725497 NYR74_RS08075 WP_279453234.1 1728698..1729333(-) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3873]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKDDTMFALYKDQNLYVRKSMQYLDEIAQTISMHFPVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKTKIENQNQNKIRMLPNLNISIERLLAKVGIHTVADLKSMGAISVFVRLIQQ
GLEATPLLLFKLHGAIQYKYIYMLTEQEKQNLLIEADNALYQAGLRKRFIL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725497 NYR74_RS08075 WP_279453234.1 1728698..1729333(-) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3873]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
TTCGTTCTTAGGTATCTTTAAAGACGATACTATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAATCGATGC
AATATTTAGATGAAATAGCTCAAACAATATCCATGCACTTTCCGGTTGACCGCCATATCAGTAATCGTTCCAAAATCTTT
TATCTCCTCCCCCCTTCAATTCTCAATAATCTACAAACCTATTCCCATTGGATATCTTCAGCTATTCTCGAATATCAACA
ATCTAAAACAAAAATTGAAAATCAGAATCAGAATAAAATTCGTATGCTGCCCAACTTAAATATCAGTATTGAAAGGCTAC
TCGCTAAAGTTGGTATTCATACAGTAGCGGATCTAAAAAGTATGGGTGCAATTAGCGTTTTTGTACGTCTAATCCAGCAA
GGTTTGGAAGCTACGCCACTATTATTATTTAAACTACATGGCGCGATTCAATATAAATATATTTATATGCTGACCGAACA
AGAGAAACAGAATTTACTTATTGAAGCTGACAATGCGCTTTATCAGGCAGGATTACGGAAGAGATTCATACTATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

88.626

100

0.886
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

61.321

100

0.616
  sxy/tfoX Glaesserella parasuis strain SC1401

40

99.526

0.398