Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR70_RS09910 Genome accession   NZ_CP103816
Coordinates   2150768..2151130 (-) Length   120 a.a.
NCBI ID   WP_275218340.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4026     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2145768..2156130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR70_RS09895 (NYR70_09895) - 2146562..2147182 (+) 621 WP_015674354.1 MerR family transcriptional regulator -
  NYR70_RS09900 (NYR70_09900) gshAB 2147274..2149547 (-) 2274 WP_279477187.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR70_RS09905 (NYR70_09905) asd 2149699..2150592 (-) 894 WP_275218339.1 archaetidylserine decarboxylase -
  NYR70_RS09910 (NYR70_09910) comEA/comE1 2150768..2151130 (-) 363 WP_275218340.1 ComEA family DNA-binding protein Machinery gene
  NYR70_RS09915 (NYR70_09915) - 2151459..2152835 (+) 1377 WP_279477188.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR70_RS09920 (NYR70_09920) - 2152909..2153364 (+) 456 WP_275218342.1 MliC family protein -
  NYR70_RS09925 (NYR70_09925) waaF 2153447..2154484 (+) 1038 WP_279477189.1 lipopolysaccharide heptosyltransferase II -
  NYR70_RS09930 (NYR70_09930) rfaC 2154560..2155519 (+) 960 WP_279477896.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR70_RS09935 (NYR70_09935) rpsL 2155643..2156017 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12784.62 Da        Isoelectric Point: 10.0523

>NTDB_id=725428 NYR70_RS09910 WP_275218340.1 2150768..2151130(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 4026]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725428 NYR70_RS09910 WP_275218340.1 2150768..2151130(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 4026]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAACGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642