Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR68_RS08745 Genome accession   NZ_CP103814
Coordinates   1885994..1886629 (+) Length   211 a.a.
NCBI ID   WP_279622162.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4091     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1880994..1891629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR68_RS08700 (NYR68_08705) rplP 1881063..1881473 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR68_RS08705 (NYR68_08710) rpsC 1881487..1882191 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR68_RS08710 (NYR68_08715) rplV 1882210..1882542 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR68_RS08715 (NYR68_08720) rpsS 1882553..1882828 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR68_RS08720 (NYR68_08725) rplB 1882856..1883677 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR68_RS08725 (NYR68_08730) rplW 1883698..1884003 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR68_RS08730 (NYR68_08735) rplD 1884000..1884602 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR68_RS08735 (NYR68_08740) rplC 1884618..1885244 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR68_RS08740 (NYR68_08745) rpsJ 1885270..1885581 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR68_RS08745 (NYR68_08750) sxy/tfoX 1885994..1886629 (+) 636 WP_279622162.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR68_RS08750 (NYR68_08755) rpsT 1886688..1886951 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR68_RS08755 (NYR68_08760) murJ 1887358..1888926 (+) 1569 WP_279436938.1 murein biosynthesis integral membrane protein MurJ -
  NYR68_RS08760 (NYR68_08765) - 1888946..1890013 (+) 1068 WP_279436939.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24630.89 Da        Isoelectric Point: 9.8825

>NTDB_id=725368 NYR68_RS08745 WP_279622162.1 1885994..1886629(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 4091]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLDEIAQTISMHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKTKIENQNQNKIRMLPNLNISIERLLAKVGIHTVADLKSMGAISVFVRLIQQ
GLEATPLLLFKLHGAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFIL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725368 NYR68_RS08745 WP_279622162.1 1885994..1886629(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 4091]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
TTCGTTCTTAGGTATCTTTAAAGAAGATACTATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAATCGATGC
AATATTTAGATGAAATAGCTCAAACAATATCCATGCACTTTCTGGTTGACCGCCATATCAGTAATCGTTCCAAAATCTTT
TATCTCCTCCCCCCTTCAATTCTCAATAATCTACAAACCTATTCCCATTGGATATCTTCAGCTATTCTCGAATATCAACA
ATCTAAAACAAAAATTGAAAATCAGAATCAGAATAAAATTCGTATGCTGCCCAACTTAAATATCAGTATTGAAAGGCTAC
TCGCTAAAGTTGGTATTCATACAGTAGCGGATCTAAAAAGTATGGGTGCAATTAGCGTTTTTGTACGTCTAATCCAGCAA
GGTTTGGAAGCTACGCCACTATTATTATTTAAACTACATGGCGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCTGACAATGCGCTTTATCAGGCAGGATTACGGAAGAGATTCATACTATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-102)

TfoX C-terminal domain (TfoX_C)

(117-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

88.626

100

0.886
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

61.321

100

0.616
  sxy/tfoX Glaesserella parasuis strain SC1401

40.476

99.526

0.403