Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   P0D76_RS07730 Genome accession   NZ_CP119149
Coordinates   1731011..1732027 (-) Length   338 a.a.
NCBI ID   WP_007827388.1    Uniprot ID   A0ABD5EE38
Organism   Streptomyces sp. AM 3-1-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726011..1737027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0D76_RS07720 (P0D76_07720) rcrP 1727187..1728920 (+) 1734 WP_010268419.1 ABC transporter ATP-binding protein Regulator
  P0D76_RS07725 (P0D76_07725) rcrQ 1728920..1730848 (+) 1929 WP_275528864.1 ABC transporter ATP-binding protein Regulator
  P0D76_RS07730 (P0D76_07730) rpoS 1731011..1732027 (-) 1017 WP_007827388.1 RNA polymerase sigma factor Regulator
  P0D76_RS07735 (P0D76_07735) dnaG 1732683..1734596 (-) 1914 WP_275528865.1 DNA primase -
  P0D76_RS07740 (P0D76_07740) - 1734868..1735641 (-) 774 WP_275528866.1 type III effector protein -
  P0D76_RS07745 (P0D76_07745) - 1735779..1736219 (+) 441 WP_008748115.1 Hsp20/alpha crystallin family protein -
  P0D76_RS07750 (P0D76_07750) - 1736407..1736826 (+) 420 WP_275531287.1 DUF2267 domain-containing protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37515.12 Da        Isoelectric Point: 9.8399

>NTDB_id=725323 P0D76_RS07730 WP_007827388.1 1731011..1732027(-) (rpoS) [Streptomyces sp. AM 3-1-1]
MPTQLRATTSTPQDAPPLPGVPPQRTRERTPAPPGGHAPDLFRQYLREIGRIPLLTAADEVDLARRVEAGLFAEAKLAGP
GPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEGNLGLIRAVEKFDYTRGFKFSTYATWW
IRQAMSRALADQARTIRVPVHVVELINRVVRVQRGLLQERGHEPSHAEVAALLGLTKERVGEVLRLAQEPVSLHTPVGGE
DEVALGDLIEDGDAPSPPESAALLLLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKT
LAKLRSHAFADQLRGYLD

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=725323 P0D76_RS07730 WP_007827388.1 1731011..1732027(-) (rpoS) [Streptomyces sp. AM 3-1-1]
GTGCCCACGCAGCTTCGCGCCACGACGTCCACCCCGCAGGACGCCCCGCCCCTCCCGGGCGTCCCCCCGCAGCGCACGCG
CGAGCGCACCCCCGCCCCTCCCGGCGGCCACGCGCCCGATCTCTTCCGCCAGTACTTACGCGAGATAGGCCGCATCCCGC
TCCTCACCGCCGCCGACGAGGTCGACCTCGCCCGCCGCGTCGAGGCCGGCCTCTTCGCCGAGGCGAAACTCGCCGGGCCC
GGCCCGCTCGACACCCGCCTCGCCCTCGATCTCGACCGCCTCGTCGTCCTCGGCCGCGCCGCCAAGCGCCGCCTCATCGA
GTCCAACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGCGGGGCGCGGCCTGACGATGCTCGACCTCGTCCAGGAGG
GCAATCTCGGCCTCATCCGCGCCGTCGAGAAGTTCGACTACACGCGCGGCTTCAAGTTCTCCACGTACGCCACCTGGTGG
ATTCGCCAGGCGATGTCCCGCGCGCTCGCCGACCAGGCCCGCACGATCCGCGTGCCCGTGCACGTCGTCGAGCTGATCAA
CCGCGTCGTACGGGTCCAGCGCGGACTGCTCCAGGAGCGCGGCCACGAGCCGAGCCACGCGGAGGTCGCCGCCCTCCTCG
GCCTCACGAAGGAGCGCGTCGGCGAGGTCCTGCGCCTCGCGCAGGAGCCCGTCTCCCTCCACACCCCGGTCGGCGGCGAG
GACGAGGTCGCGCTCGGCGACCTCATCGAGGACGGCGACGCCCCCTCGCCCCCCGAGTCCGCCGCGCTGCTCCTGCTGCG
CCGCCACCTCGAAGACGTCCTCTCGACCCTCGGCGAGCGCGAACGCCAGGTCGTCCAGCTCCGCTACGGACTCGACGACG
GCCGCCCCCGCACCCTGGAGGAGATCGGGACCCTCTTCGGGGTCACGCGCGAACGCATCCGCCAGATCGAGGCCAAGACC
CTCGCCAAACTCCGCTCCCACGCCTTCGCCGACCAGCTCAGGGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(184-260)

Sigma-70, region 4 (Sigma70_r4)

(273-325)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(40-73)

Sigma-70 region 2 (Sigma70_r2)

(105-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5EE38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.098

87.87

0.379