Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR84_RS10885 Genome accession   NZ_CP103812
Coordinates   2346061..2346351 (+) Length   96 a.a.
NCBI ID   WP_279469954.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3826     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2341061..2351351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR84_RS10865 (NYR84_10865) rsmI 2342216..2343070 (+) 855 WP_279469952.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR84_RS10870 (NYR84_10870) - 2343114..2343683 (-) 570 WP_115587467.1 elongation factor P hydroxylase -
  NYR84_RS10875 (NYR84_10875) - 2343743..2345491 (-) 1749 WP_279469953.1 protein-disulfide reductase DsbD -
  NYR84_RS10880 (NYR84_10880) - 2345709..2346080 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR84_RS10885 (NYR84_10885) HI0659 2346061..2346351 (+) 291 WP_279469954.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR84_RS10890 (NYR84_10890) - 2346419..2347381 (-) 963 WP_279469955.1 calcium/sodium antiporter -
  NYR84_RS10895 (NYR84_10895) - 2347454..2347951 (+) 498 WP_039198817.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR84_RS10900 (NYR84_10900) artP 2348176..2348910 (+) 735 WP_039198820.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR84_RS10905 (NYR84_10905) - 2348930..2349649 (+) 720 WP_279469956.1 transporter substrate-binding domain-containing protein -
  NYR84_RS10910 (NYR84_10910) artQ 2349655..2350326 (+) 672 WP_039198825.1 arginine ABC transporter permease ArtQ -
  NYR84_RS10915 (NYR84_10915) artM 2350326..2351009 (+) 684 WP_279455017.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10791.57 Da        Isoelectric Point: 8.7275

>NTDB_id=725322 NYR84_RS10885 WP_279469954.1 2346061..2346351(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3826]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDEAHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725322 NYR84_RS10885 WP_279469954.1 2346061..2346351(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3826]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTTCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAGCTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615