Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   P0D76_RS07725 Genome accession   NZ_CP119149
Coordinates   1728920..1730848 (+) Length   642 a.a.
NCBI ID   WP_275528864.1    Uniprot ID   -
Organism   Streptomyces sp. AM 3-1-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1723920..1735848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0D76_RS07710 (P0D76_07710) - 1725019..1725312 (+) 294 WP_029396780.1 hypothetical protein -
  P0D76_RS07715 (P0D76_07715) - 1725622..1727073 (+) 1452 WP_029396782.1 FGGY family carbohydrate kinase -
  P0D76_RS07720 (P0D76_07720) rcrP 1727187..1728920 (+) 1734 WP_010268419.1 ABC transporter ATP-binding protein Regulator
  P0D76_RS07725 (P0D76_07725) rcrQ 1728920..1730848 (+) 1929 WP_275528864.1 ABC transporter ATP-binding protein Regulator
  P0D76_RS07730 (P0D76_07730) rpoS 1731011..1732027 (-) 1017 WP_007827388.1 RNA polymerase sigma factor Regulator
  P0D76_RS07735 (P0D76_07735) dnaG 1732683..1734596 (-) 1914 WP_275528865.1 DNA primase -
  P0D76_RS07740 (P0D76_07740) - 1734868..1735641 (-) 774 WP_275528866.1 type III effector protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69363.43 Da        Isoelectric Point: 5.5721

>NTDB_id=725322 P0D76_RS07725 WP_275528864.1 1728920..1730848(+) (rcrQ) [Streptomyces sp. AM 3-1-1]
MAGPGGRMAAGAAAAQGLDDFKGTAKRLARRFAPYKALLTGMLALGIVSVAASVSGPKILGHATDLLFGGVIGGQLRAGQ
TKEQVIEAARERGDGGFADLLKGVHFTPGRGIDFGAIGEVLLIATLVFAVGGVLMSISVRLSNRAINLMIRRLREDVQSK
LSRLPLSYFDRRQRGEVLSRATNDMDNLQQTLQQTLGQLVNSVLTIIGVLAVMFWISWLLALVALVTVPLSALVATRVGK
RSQPQFVRQWKSTGELNAHIEEMYTGHTLVKVFGRQEESAEIFREHNEALYDASNRAQFTSGVMQPLMMFVSNINYVLVA
VVGGLRVASGALSIGDVQAFVQYSRQFSMPLTQVASMANLIQSGVASAERIFELLDADEQSADPAEPERPEKLRGRVAFE
HVSFRYQEDKPLIEDLSLEVDPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIARMRRDDLRAGIGMVLQDT
WLFGGSIAENIAYGAAREVTREEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMERLAAGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHEELLAAGGAYARLYAAQFAQAVAE
VE

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=725322 P0D76_RS07725 WP_275528864.1 1728920..1730848(+) (rcrQ) [Streptomyces sp. AM 3-1-1]
ATGGCCGGTCCCGGTGGACGAATGGCGGCCGGAGCCGCCGCGGCGCAGGGTCTCGACGACTTCAAGGGGACGGCGAAGCG
GCTCGCACGCCGCTTCGCCCCGTACAAAGCGCTCCTGACGGGGATGCTGGCGCTCGGGATAGTGAGCGTGGCGGCGTCGG
TGTCGGGGCCGAAGATCCTCGGGCACGCGACCGACCTGCTCTTCGGCGGGGTGATCGGCGGGCAGTTGCGCGCCGGGCAG
ACCAAGGAACAGGTCATCGAGGCGGCGCGGGAGCGCGGTGACGGCGGTTTCGCCGACCTCCTCAAGGGGGTGCACTTCAC
GCCGGGCCGGGGCATCGACTTCGGGGCGATCGGCGAGGTGCTGCTCATCGCGACGCTCGTCTTCGCGGTCGGCGGCGTGC
TCATGTCGATCTCGGTGCGGCTCTCGAACCGGGCGATCAACCTCATGATCAGGCGGCTGCGCGAGGACGTGCAGTCGAAG
CTGTCGCGCCTGCCGCTGTCGTACTTCGACCGCCGTCAGCGCGGTGAGGTGCTGAGCCGCGCGACGAACGACATGGACAA
CCTCCAGCAGACCTTGCAGCAGACGCTCGGCCAGCTCGTCAACTCGGTGCTGACGATCATCGGGGTGCTCGCGGTCATGT
TCTGGATCTCGTGGCTGCTCGCGCTCGTCGCGCTCGTGACCGTGCCGCTCTCCGCGCTCGTCGCGACGCGCGTGGGCAAG
CGCTCGCAGCCGCAGTTCGTGCGGCAGTGGAAGTCGACGGGCGAGCTGAACGCGCACATCGAGGAGATGTACACGGGCCA
CACGCTCGTGAAGGTCTTCGGGCGCCAGGAGGAGTCGGCGGAGATCTTCCGCGAGCACAACGAGGCGCTGTACGACGCCT
CGAACCGGGCGCAGTTCACGAGCGGTGTCATGCAGCCGCTGATGATGTTCGTCTCGAACATCAACTACGTGCTCGTCGCC
GTCGTCGGCGGGCTGCGGGTCGCCTCGGGCGCGCTGTCGATCGGTGACGTGCAGGCGTTCGTGCAGTACTCGCGGCAGTT
CTCGATGCCGCTCACGCAGGTCGCCTCGATGGCGAACCTCATCCAGTCGGGCGTCGCCTCGGCGGAGCGGATCTTCGAGC
TGCTCGACGCCGACGAGCAGAGCGCGGACCCGGCCGAGCCGGAGCGCCCCGAGAAGCTGCGCGGGCGAGTCGCCTTCGAG
CACGTCTCCTTCCGCTACCAGGAGGACAAGCCGCTCATCGAGGACCTGTCCCTGGAGGTCGACCCGGGCCACACGGTCGC
GATCGTCGGCCCCACGGGCGCGGGCAAGACGACGCTCGTCAACCTGCTGCTCCGCTTCTACGACGTGACGGGCGGGCGCA
TCACGCTCGACGGCGTCGACATCGCGCGGATGCGCCGCGACGACCTGCGCGCCGGGATAGGGATGGTGCTCCAGGACACG
TGGCTCTTCGGCGGCTCGATCGCGGAGAACATCGCGTACGGGGCCGCGCGCGAGGTCACCCGCGAGGAGATCGAGGAGGC
GGCGAGGGCGGCGCACGCGGACCGCTTCGTGCGCACGCTCCCCGAGGGCTACGACACGGTCATCGACGACGAGGGAACGG
GCGTGAGCGCGGGCGAGAAGCAGCTCATCACGATCGCGCGCGCCTTCCTCTCGGACCCGGTGATCCTCGTGCTCGACGAG
GCGACCAGCTCCGTGGACACCCGGACCGAGGTCCTGATCCAGAAGGCGATGGAGCGCCTCGCGGCCGGGCGCACGAGCTT
CGTCATCGCGCACCGGCTCTCCACGATCCGCGACGCGGACACGATCCTCGTCATGGAGAACGGCGCGATCGTGGAGCAGG
GCTCGCACGAGGAACTGCTCGCGGCGGGCGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTCGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.291

96.262

0.388