Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   P0D76_RS07720 Genome accession   NZ_CP119149
Coordinates   1727187..1728920 (+) Length   577 a.a.
NCBI ID   WP_010268419.1    Uniprot ID   A0ABU2REE2
Organism   Streptomyces sp. AM 3-1-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722187..1733920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0D76_RS07685 (P0D76_07685) - 1722894..1723295 (+) 402 WP_275528862.1 hypothetical protein -
  P0D76_RS07690 (P0D76_07690) - 1723452..1724198 (-) 747 WP_275528863.1 phosphotransferase -
  P0D76_RS07710 (P0D76_07710) - 1725019..1725312 (+) 294 WP_029396780.1 hypothetical protein -
  P0D76_RS07715 (P0D76_07715) - 1725622..1727073 (+) 1452 WP_029396782.1 FGGY family carbohydrate kinase -
  P0D76_RS07720 (P0D76_07720) rcrP 1727187..1728920 (+) 1734 WP_010268419.1 ABC transporter ATP-binding protein Regulator
  P0D76_RS07725 (P0D76_07725) rcrQ 1728920..1730848 (+) 1929 WP_275528864.1 ABC transporter ATP-binding protein Regulator
  P0D76_RS07730 (P0D76_07730) rpoS 1731011..1732027 (-) 1017 WP_007827388.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62537.60 Da        Isoelectric Point: 5.7618

>NTDB_id=725321 P0D76_RS07720 WP_010268419.1 1727187..1728920(+) (rcrP) [Streptomyces sp. AM 3-1-1]
MLIRLLRASLAPYKRPIALLVLLQFVQTCAALYLPTLNADIIDNGVVKGDTGYIMEFGGLMLIVAVVQMAGNVGAVFYGA
RTAAALGRDVRARIFDRVQSFSAREVGQFGAPTLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGVILALGQDVPLSSI
LLVVIPVLGGSVGLIVRKLRPLFRTLQTRLDTVNRVLREQITGNRVIRAFVRDEYEGTRFDGANGELTEVSLGTGRLFAL
MFPTVMTVVNLSSVAVVWFGSHRIDSGGMQIGALTAFLSYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTASSVVP
PQAGITELRRHGRLELRGAGFRFPGAEEPVLRGIDLEALPGETTAVIGSTGSGKTTLLGLVPRLFDATEGEVLVDGVDVR
EVDPALLARTVGLVPQKPYLFSGTVASNLRYGNPDASDEELWHALEVAQAKGFVEKLEHRLEAPVAQGGSNFSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGHETARATVVIVAQRVATIRDADRILVLDEGRIVGVGRHHELMETN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=725321 P0D76_RS07720 WP_010268419.1 1727187..1728920(+) (rcrP) [Streptomyces sp. AM 3-1-1]
GTGCTCATACGACTTCTGCGGGCCTCGCTGGCCCCCTACAAACGGCCCATCGCCCTTCTCGTCCTGCTCCAGTTCGTCCA
GACCTGCGCCGCGCTCTATCTGCCCACGCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGCGACACGGGCTACA
TCATGGAATTCGGCGGGCTCATGCTGATCGTCGCCGTCGTGCAGATGGCGGGGAACGTCGGCGCGGTGTTCTACGGGGCG
CGTACCGCCGCCGCGCTCGGGCGGGACGTGCGCGCGCGAATATTCGACCGCGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGCGCACCGACGCTCATCACGCGGACGACGAACGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGTCGTTCA
CGCTCATGGTCTCGGCGCCGATCATGTGCGTCGGCGGTGTGATCCTCGCGCTCGGCCAGGACGTGCCGCTCTCCTCGATC
CTGCTCGTCGTGATCCCCGTGCTCGGCGGCTCGGTCGGGCTCATCGTGCGCAAGCTGCGCCCGCTGTTCCGTACGCTCCA
GACCCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGGAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGGGCACGCGCTTCGACGGCGCGAACGGTGAGCTGACGGAGGTCTCGCTCGGCACCGGGCGGCTCTTCGCGCTC
ATGTTCCCGACCGTCATGACCGTCGTGAACCTCTCCAGCGTCGCCGTCGTGTGGTTCGGCTCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGGGCGCTGACCGCGTTCCTCTCGTACCTCATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGACACCGCGTCGAGCGTCGTGCCG
CCGCAGGCCGGGATCACCGAGCTGCGCCGGCACGGGCGGCTCGAACTGCGCGGCGCCGGCTTCCGCTTCCCGGGGGCCGA
GGAGCCGGTCCTGCGCGGGATCGACCTCGAAGCGCTCCCCGGCGAGACGACGGCCGTGATCGGCTCGACGGGCAGCGGCA
AGACGACGCTGCTCGGGCTCGTGCCGCGCCTGTTCGACGCGACCGAGGGCGAGGTCCTGGTCGACGGCGTGGACGTGCGC
GAGGTCGATCCCGCGCTGCTCGCGCGCACGGTCGGGCTCGTCCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTCGCGAG
CAATCTGCGCTACGGGAACCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGGCTTCG
TGGAGAAGCTGGAGCACCGGCTGGAGGCGCCGGTGGCGCAGGGCGGCTCGAACTTCTCGGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGGCCACGAGACGGCGCGGGCGACGGTGGTGATCGTGGCGCAGCGCGTCGCGACGATCC
GCGACGCGGACCGCATCCTCGTGCTCGACGAGGGGCGGATCGTGGGCGTGGGGCGGCACCACGAGCTGATGGAGACCAAT
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.863

100

0.402