Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR84_RS10245 Genome accession   NZ_CP103812
Coordinates   2211352..2211717 (-) Length   121 a.a.
NCBI ID   WP_279469904.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3826     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2206352..2216717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR84_RS10230 (NYR84_10230) - 2207146..2207766 (+) 621 WP_279455067.1 MerR family transcriptional regulator -
  NYR84_RS10235 (NYR84_10235) gshAB 2207858..2210131 (-) 2274 WP_279469903.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR84_RS10240 (NYR84_10240) asd 2210283..2211176 (-) 894 WP_039198612.1 archaetidylserine decarboxylase -
  NYR84_RS10245 (NYR84_10245) comEA/comE1 2211352..2211717 (-) 366 WP_279469904.1 ComEA family DNA-binding protein Machinery gene
  NYR84_RS10250 (NYR84_10250) - 2212056..2213441 (+) 1386 WP_279469905.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR84_RS10255 (NYR84_10255) - 2213515..2213970 (+) 456 WP_279469906.1 MliC family protein -
  NYR84_RS10260 (NYR84_10260) waaF 2214053..2215090 (+) 1038 WP_279469907.1 lipopolysaccharide heptosyltransferase II -
  NYR84_RS10265 (NYR84_10265) rfaC 2215166..2216125 (+) 960 WP_279469908.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR84_RS10270 (NYR84_10270) rpsL 2216249..2216623 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12823.73 Da        Isoelectric Point: 10.4294

>NTDB_id=725321 NYR84_RS10245 WP_279469904.1 2211352..2211717(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3826]
MKTRSKLGLSLLIGMLSTGVLAAEKTKPNVTEPSPVVQNAQATSPKHSHAEMTNNANLVNINIATAAEIQDKLVGIGAKK
AQAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725321 NYR84_RS10245 WP_279469904.1 2211352..2211717(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3826]
ATGAAAACACGTTCAAAACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTGTATTAGCTGCTGAAAAAACAAA
GCCTAACGTCACAGAACCCTCTCCCGTGGTTCAAAACGCACAAGCAACCAGCCCTAAACATAGCCATGCTGAAATGACAA
ACAATGCAAATTTAGTCAATATCAATATCGCAACAGCAGCGGAAATCCAAGATAAATTAGTCGGTATTGGCGCTAAAAAA
GCACAAGCAATTGTTGAATACCGTACAAAAAACGGTGCATTTAGTAGCCTAGAGCAACTTACCGATGTATCCGGTATCGG
CAAAGCTACACTGGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(55-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.678

100

0.587
  comEA Acinetobacter baumannii strain A118

35.878

100

0.388
  comE1/comEA Haemophilus influenzae Rd KW20

52.809

73.554

0.388