Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR65_RS08940 Genome accession   NZ_CP103811
Coordinates   1916416..1917051 (+) Length   211 a.a.
NCBI ID   WP_039198207.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain CCUG2041     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1911416..1922051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR65_RS08895 (NYR65_08895) rplP 1911482..1911892 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR65_RS08900 (NYR65_08900) rpsC 1911906..1912610 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR65_RS08905 (NYR65_08905) rplV 1912629..1912961 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR65_RS08910 (NYR65_08910) rpsS 1912972..1913247 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR65_RS08915 (NYR65_08915) rplB 1913275..1914096 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR65_RS08920 (NYR65_08920) rplW 1914117..1914422 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR65_RS08925 (NYR65_08925) rplD 1914419..1915021 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR65_RS08930 (NYR65_08930) rplC 1915037..1915663 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR65_RS08935 (NYR65_08935) rpsJ 1915689..1916000 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR65_RS08940 (NYR65_08940) sxy/tfoX 1916416..1917051 (+) 636 WP_039198207.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR65_RS08945 (NYR65_08945) rpsT 1917110..1917373 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR65_RS08950 (NYR65_08950) murJ 1917780..1919348 (+) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  NYR65_RS08955 (NYR65_08955) - 1919369..1920436 (+) 1068 WP_039198210.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24571.73 Da        Isoelectric Point: 9.6735

>NTDB_id=725289 NYR65_RS08940 WP_039198207.1 1916416..1917051(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain CCUG2041]
MKYTAEELEKLKALLSPLGEVAFKPYFSFLGIFKDDTMFALYKNQQLYVRKSVQYLEEIAQTISIHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFMP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725289 NYR65_RS08940 WP_039198207.1 1916416..1917051(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain CCUG2041]
ATGAAATACACAGCAGAGGAGCTAGAAAAACTTAAAGCATTATTATCCCCTCTCGGGGAGGTCGCCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAGACGATACCATGTTTGCTCTCTACAAAAATCAACAGTTATACGTACGCAAATCGGTTC
AATACTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGTCACATCAGCAATCGTTCTAAAATCTTT
TATCTTCTTCCTCCTTCCATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGCTGGATTACGGAAAAGATTCATGCCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

91.429

99.526

0.91
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

64.151

100

0.645
  sxy/tfoX Glaesserella parasuis strain SC1401

41.905

99.526

0.417