NTDB

Overview

Name	sxy/tfoX	Type	Regulator
Locus tag	NYR62_RS09140	Genome accession	NZ_CP103809
Coordinates	1982856..1983512 (-)	Length	218 a.a.
NCBI ID	WP_279457328.1	Uniprot ID	-
Organism	Actinobacillus genomosp. 1 strain CCUG22229
Function	positive regulator of competence gene (predicted from homology) Competence regulation

Genomic Context

Location: 1977856..1988512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR62_RS09120 (NYR62_09120)	nanA	1978249..1979127 (+)	879	WP_279475438.1	N-acetylneuraminate lyase	-
NYR62_RS09125 (NYR62_09125)	nagB	1979171..1979974 (+)	804	WP_279475440.1	glucosamine-6-phosphate deaminase	-
NYR62_RS09130 (NYR62_09130)	nagA	1980026..1981177 (+)	1152	WP_279475441.1	N-acetylglucosamine-6-phosphate deacetylase	-
NYR62_RS09135 (NYR62_09135)	fumC	1981306..1982700 (-)	1395	WP_012263385.1	class II fumarate hydratase	-
NYR62_RS09140 (NYR62_09140)	sxy/tfoX	1982856..1983512 (-)	657	WP_279457328.1	TfoX/Sxy family DNA transformation protein	Regulator
NYR62_RS09145 (NYR62_09145)	rpsJ	1983925..1984236 (+)	312	WP_001181005.1	30S ribosomal protein S10	-
NYR62_RS09150 (NYR62_09150)	rplC	1984262..1984888 (+)	627	WP_005599280.1	50S ribosomal protein L3	-
NYR62_RS09155 (NYR62_09155)	rplD	1984904..1985506 (+)	603	WP_005599282.1	50S ribosomal protein L4	-
NYR62_RS09160 (NYR62_09160)	rplW	1985503..1985808 (+)	306	WP_005605807.1	50S ribosomal protein L23	-
NYR62_RS09165 (NYR62_09165)	rplB	1985829..1986650 (+)	822	WP_014992368.1	50S ribosomal protein L2	-
NYR62_RS09170 (NYR62_09170)	rpsS	1986678..1986953 (+)	276	WP_005539416.1	30S ribosomal protein S19	-
NYR62_RS09175 (NYR62_09175)	rplV	1986964..1987296 (+)	333	WP_010945717.1	50S ribosomal protein L22	-
NYR62_RS09180 (NYR62_09180)	rpsC	1987315..1988022 (+)	708	WP_005599293.1	30S ribosomal protein S3	-
NYR62_RS09185 (NYR62_09185)	rplP	1988036..1988446 (+)	411	WP_005599294.1	50S ribosomal protein L16	-

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 25649.00 Da Isoelectric Point: 9.9262

                                >NTDB_id=725240 NYR62_RS09140 WP_279457328.1 1982856..1983512(-) (sxy/tfoX) [Actinobacillus genomosp. 1 strain CCUG22229]

MAISPKKFQYLKEIFSPIGEINFKSYFSYLGIFKDDTMFALYDHKNDKLYLRKSDRFYSDIIRTIPVHFLIDRRIGKQQS

HIFYFIPSSIIHNLHSYTHWILSSIEEYQTAKAKLISQNKNKIRLLPNLNINIERLLARVEIYTVDDLKNVGIIDAFVKL

ILLGLEVTELLLFKLYGALEHKYIYMLSKREKQSLLVEADLALYNAGLRKRFTISSSN

Nucleotide

Download Length: 657 bp

                                >NTDB_id=725240 NYR62_RS09140 WP_279457328.1 1982856..1983512(-) (sxy/tfoX) [Actinobacillus genomosp. 1 strain CCUG22229]

ATGGCAATATCCCCAAAAAAGTTCCAATATCTTAAGGAGATTTTTAGTCCGATTGGAGAAATCAACTTCAAAAGCTATTT

TTCTTACTTAGGAATATTTAAAGACGATACTATGTTCGCCCTCTATGATCATAAAAATGATAAGTTATACTTAAGAAAAT

CAGACCGATTTTATTCAGATATAATACGCACGATACCGGTACATTTTCTTATCGACCGCCGTATCGGCAAACAGCAATCT

CATATTTTTTATTTCATACCTTCTTCTATTATTCATAATCTTCATTCATATACGCACTGGATTCTGTCTTCTATCGAAGA

ATATCAAACGGCAAAAGCAAAGCTGATTTCTCAAAATAAAAATAAAATTCGTCTCCTTCCCAATTTAAATATTAATATCG

AAAGATTACTGGCACGTGTTGAAATTTATACGGTAGACGACCTGAAAAACGTGGGGATTATAGACGCTTTCGTCAAACTG

ATACTGCTCGGTTTAGAAGTAACAGAATTACTGCTCTTCAAGCTTTACGGTGCGCTTGAACACAAATATATCTATATGTT

ATCTAAACGGGAAAAACAATCTTTACTGGTTGAAGCTGATTTGGCTCTTTATAATGCGGGTCTGCGTAAACGCTTCACTA

TCTCATCTAGCAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(13-107)

TfoX C-terminal domain (TfoX_C)

(120-198)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
sxy/tfoX	Actinobacillus pleuropneumoniae strain HS143	90.826	100	0.908
sxy/tfoX	Actinobacillus suis H91-0380	60.465	98.624	0.596
sxy/tfoX	Glaesserella parasuis strain SC1401	40.67	95.872	0.39

Detailed information NTG0725240