NTDB

Overview

Name	sxy/tfoX	Type	Regulator
Locus tag	NYR61_RS09540	Genome accession	NZ_CP103808
Coordinates	2039148..2039804 (-)	Length	218 a.a.
NCBI ID	WP_279457328.1	Uniprot ID	-
Organism	Actinobacillus genomosp. 1 strain CCUG22231
Function	positive regulator of competence gene (predicted from homology) Competence regulation

Genomic Context

Location: 2034148..2044804

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR61_RS09520 (NYR61_09520)	nanA	2034539..2035417 (+)	879	WP_005599265.1	N-acetylneuraminate lyase	-
NYR61_RS09525 (NYR61_09525)	nagB	2035463..2036266 (+)	804	WP_279457326.1	glucosamine-6-phosphate deaminase	-
NYR61_RS09530 (NYR61_09530)	nagA	2036318..2037469 (+)	1152	WP_279468601.1	N-acetylglucosamine-6-phosphate deacetylase	-
NYR61_RS09535 (NYR61_09535)	fumC	2037598..2038992 (-)	1395	WP_012263385.1	class II fumarate hydratase	-
NYR61_RS09540 (NYR61_09540)	sxy/tfoX	2039148..2039804 (-)	657	WP_279457328.1	TfoX/Sxy family DNA transformation protein	Regulator
NYR61_RS09545 (NYR61_09545)	rpsJ	2040218..2040529 (+)	312	WP_001181005.1	30S ribosomal protein S10	-
NYR61_RS09550 (NYR61_09550)	rplC	2040555..2041181 (+)	627	WP_279468602.1	50S ribosomal protein L3	-
NYR61_RS09555 (NYR61_09555)	rplD	2041197..2041799 (+)	603	WP_005599282.1	50S ribosomal protein L4	-
NYR61_RS09560 (NYR61_09560)	rplW	2041796..2042101 (+)	306	WP_005599290.1	50S ribosomal protein L23	-
NYR61_RS09565 (NYR61_09565)	rplB	2042122..2042943 (+)	822	WP_014992368.1	50S ribosomal protein L2	-
NYR61_RS09570 (NYR61_09570)	rpsS	2042971..2043246 (+)	276	WP_005539416.1	30S ribosomal protein S19	-
NYR61_RS09575 (NYR61_09575)	rplV	2043257..2043589 (+)	333	WP_010945717.1	50S ribosomal protein L22	-
NYR61_RS09580 (NYR61_09580)	rpsC	2043608..2044315 (+)	708	WP_005599293.1	30S ribosomal protein S3	-
NYR61_RS09585 (NYR61_09585)	rplP	2044329..2044739 (+)	411	WP_005599294.1	50S ribosomal protein L16	-

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 25649.00 Da Isoelectric Point: 9.9262

                                >NTDB_id=725214 NYR61_RS09540 WP_279457328.1 2039148..2039804(-) (sxy/tfoX) [Actinobacillus genomosp. 1 strain CCUG22231]

MAISPKKFQYLKEIFSPIGEINFKSYFSYLGIFKDDTMFALYDHKNDKLYLRKSDRFYSDIIRTIPVHFLIDRRIGKQQS

HIFYFIPSSIIHNLHSYTHWILSSIEEYQTAKAKLISQNKNKIRLLPNLNINIERLLARVEIYTVDDLKNVGIIDAFVKL

ILLGLEVTELLLFKLYGALEHKYIYMLSKREKQSLLVEADLALYNAGLRKRFTISSSN

Nucleotide

Download Length: 657 bp

                                >NTDB_id=725214 NYR61_RS09540 WP_279457328.1 2039148..2039804(-) (sxy/tfoX) [Actinobacillus genomosp. 1 strain CCUG22231]

ATGGCAATATCCCCAAAAAAGTTCCAATATCTTAAGGAGATTTTTAGTCCGATTGGAGAAATCAACTTCAAAAGCTATTT

TTCTTACTTAGGAATATTTAAAGACGATACTATGTTCGCCCTCTATGATCATAAAAATGATAAGTTATACTTAAGAAAAT

CAGACCGATTTTATTCAGATATAATACGCACGATACCGGTACATTTTCTTATCGACCGCCGTATCGGCAAACAGCAATCT

CATATTTTTTATTTCATACCTTCTTCTATTATTCATAATCTTCATTCATATACGCACTGGATTCTGTCTTCTATCGAAGA

ATATCAAACGGCAAAAGCAAAGCTGATTTCTCAAAATAAAAATAAAATTCGTCTCCTTCCCAATTTAAATATTAATATCG

AAAGATTACTGGCACGTGTTGAAATTTATACGGTAGACGACCTGAAAAACGTGGGGATTATAGACGCTTTCGTCAAACTG

ATACTGCTCGGTTTAGAAGTAACAGAATTACTGCTCTTCAAGCTTTACGGTGCGCTTGAACACAAATATATCTATATGTT

ATCTAAACGGGAAAAACAATCTTTACTGGTTGAAGCTGATTTGGCTCTTTATAATGCGGGTCTGCGTAAACGCTTCACTA

TCTCATCTAGCAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(13-107)

TfoX C-terminal domain (TfoX_C)

(120-198)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
sxy/tfoX	Actinobacillus pleuropneumoniae strain HS143	90.826	100	0.908
sxy/tfoX	Actinobacillus suis H91-0380	60.465	98.624	0.596
sxy/tfoX	Glaesserella parasuis strain SC1401	40.67	95.872	0.39

Detailed information NTG0725214