Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR61_RS04920 Genome accession   NZ_CP103808
Coordinates   1095714..1097093 (+) Length   459 a.a.
NCBI ID   WP_279469457.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090714..1102093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR61_RS04890 (NYR61_04890) yacG 1090996..1091184 (-) 189 WP_005623139.1 DNA gyrase inhibitor YacG -
  NYR61_RS04895 (NYR61_04895) coaE 1091120..1091803 (-) 684 WP_279469453.1 dephospho-CoA kinase -
  NYR61_RS04900 (NYR61_04900) - 1091825..1092469 (-) 645 WP_347710238.1 prepilin peptidase -
  NYR61_RS04905 (NYR61_04905) - 1092490..1093692 (-) 1203 WP_279469455.1 type II secretion system F family protein -
  NYR61_RS04910 (NYR61_04910) pilB 1093676..1095070 (-) 1395 WP_279469456.1 GspE/PulE family protein Machinery gene
  NYR61_RS04915 (NYR61_04915) pilA 1095088..1095534 (-) 447 WP_279458428.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR61_RS04920 (NYR61_04920) radA 1095714..1097093 (+) 1380 WP_279469457.1 DNA repair protein RadA Machinery gene
  NYR61_RS04925 (NYR61_04925) - 1097136..1097369 (-) 234 WP_237593621.1 YgjV family protein -
  NYR61_RS04930 (NYR61_04930) folA 1097499..1097987 (-) 489 WP_279469458.1 type 3 dihydrofolate reductase -
  NYR61_RS04935 (NYR61_04935) proB 1098074..1099165 (+) 1092 WP_279458431.1 glutamate 5-kinase -
  NYR61_RS04940 (NYR61_04940) - 1099181..1099957 (+) 777 WP_279469459.1 TSUP family transporter -
  NYR61_RS04945 (NYR61_04945) nth 1099958..1100590 (+) 633 WP_267978577.1 endonuclease III -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49700.29 Da        Isoelectric Point: 7.9094

>NTDB_id=725199 NYR61_RS04920 WP_279469457.1 1095714..1097093(+) (radA) [Actinobacillus genomosp. 1 strain CCUG22231]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISAKESNKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAKDLPTLYVTGEESLQQVAMRANRLGLPTENLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHCIDASI
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRALPQDLVVFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKPIKGMEVFTVKKLSDALDILGNI

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725199 NYR61_RS04920 WP_279469457.1 1095714..1097093(+) (radA) [Actinobacillus genomosp. 1 strain CCUG22231]
ATGGCAAAGGCACCCAAAACAGCTTATGTATGTAATGATTGCGGCGCGGAATATTCTCGCTGGATGGGACAATGTAAAGA
GTGTAAGGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCCGCTAAAGAATCAAATAAAAACGACCGCTTCAGCGGTT
ACGCCGGAGAGACCTCCGGCAAAGTACAAACCTTATCTGAAATCAGCTTACAAGAAGTCCCTCGTTTCAGCAGCGGTTTT
AATGAACTGGATCGCGTACTGGGCGGCGGTGTTGTACCGGGTTCAGCGATTTTAATCGGCGGTCATCCCGGTGCCGGTAA
ATCCACCTTACTTTTGCAAGTCATGTGCGGATTAGCTAAAGATTTACCGACGCTTTATGTCACCGGTGAAGAATCCTTAC
AACAGGTAGCGATGAGGGCTAACCGTTTAGGCTTACCGACCGAAAATTTAAAAATGCTTTCCGAAACCTCCGTTGAGCAT
ATTTGTAATATTGCCGACCAAGAAAAACCGAAAATTATGGTGATAGACTCTATCCAAGTGATGCACCTTGCCGATATTCA
ATCATCTCCCGGCAGCGTATCTCAAGTGCGAGAATGCGCTTCGTTTCTAACCCGTTACGCGAAAACACGGCAAGTGGCGA
TTATTATGGTCGGACACGTAACCAAAGACGGTACGCTTGCCGGCCCTAAAGTATTAGAGCATTGTATTGACGCGTCGATT
TTACTGGAAGGCGAATCGGATTCTCGATTCCGTACCTTACGCAGCCAGAAAAACCGTTTCGGTGCGGTCAATGAATTGGG
CGTATTTGCCATGACCGAACAAGGCTTACGAGAAGTAAAAAATCCTTCTGCGATTTTCCTTAGCCGTAGTGATGAGCAAA
CACCGGGCAGTTCCGTAATGGTACTTTGGGAAGGAACCCGTCCGTTATTAGTTGAAATTCAAGCGTTGGTTGATCATTCG
ATGTTGGCTAATCCTCGCCGTGTCGCCGTAGGTTTGGATCACAACCGTTTATCGCTCTTACTTGCGGTGTTACATCGCCA
CGGCGGTTTGCAAATGTCGGATCAAGATGTGTTTGTCAATGTGGTCGGCGGGGTAAAAGTGACCGAGACCAGTGCCGATC
TCGCCCTAATTTTGGCGTTAATTTCCAGTTTTAGAAATCGTGCGTTACCGCAAGATTTGGTCGTATTCGGCGAGGTGGGA
CTAGCCGGAGAAATTCGTCCGGTACCGAGCGGTCAGGAACGTATTAGCGAAGCGGCGAAACACGGCTTTAAACGAGCGAT
CATTCCGCATGGCAACGCCCCCAAAAAACCGATTAAAGGCATGGAAGTGTTTACCGTTAAAAAATTAAGCGACGCACTGG
ATATCCTCGGCAATATCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

44.273

98.911

0.438
  radA Streptococcus mitis SK321

44.053

98.911

0.436
  radA Streptococcus pneumoniae Rx1

45.349

93.682

0.425
  radA Streptococcus pneumoniae D39

45.349

93.682

0.425
  radA Streptococcus pneumoniae R6

45.349

93.682

0.425
  radA Streptococcus pneumoniae TIGR4

45.349

93.682

0.425