Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR60_RS08620 Genome accession   NZ_CP103807
Coordinates   1720602..1720949 (-) Length   115 a.a.
NCBI ID   WP_279467980.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 2 strain CCUG15571     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1715602..1725949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR60_RS08605 (NYR60_08605) - 1716411..1717031 (+) 621 WP_279466739.1 MerR family transcriptional regulator -
  NYR60_RS08610 (NYR60_08610) gshAB 1717122..1719395 (-) 2274 WP_279466741.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR60_RS08615 (NYR60_08615) asd 1719552..1720445 (-) 894 WP_279466743.1 archaetidylserine decarboxylase -
  NYR60_RS08620 (NYR60_08620) comEA/comE1 1720602..1720949 (-) 348 WP_279467980.1 ComEA family DNA-binding protein Machinery gene
  NYR60_RS08625 (NYR60_08625) - 1721247..1722743 (+) 1497 WP_279466746.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR60_RS08630 (NYR60_08630) - 1722821..1723243 (+) 423 WP_279466747.1 GlcNAc transferase -
  NYR60_RS08635 (NYR60_08635) waaF 1723324..1724361 (+) 1038 WP_279466748.1 lipopolysaccharide heptosyltransferase II -
  NYR60_RS08640 (NYR60_08640) rfaC 1724437..1725396 (+) 960 WP_279466750.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR60_RS08645 (NYR60_08645) rpsL 1725520..1725894 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12662.42 Da        Isoelectric Point: 5.1316

>NTDB_id=725189 NYR60_RS08620 WP_279467980.1 1720602..1720949(-) (comEA/comE1) [Actinobacillus genomosp. 2 strain CCUG15571]
MRTIVKMSFSFLLGLFTTNTVIAETDSTAMEATPVIQNLTTEHTNTAVNQYQVNINTASSAEIQDKLIGIGEKKALAIVE
YRTKNGPFVNIEQLTEVSGIGKATLDKNRERITLE

Nucleotide


Download         Length: 348 bp        

>NTDB_id=725189 NYR60_RS08620 WP_279467980.1 1720602..1720949(-) (comEA/comE1) [Actinobacillus genomosp. 2 strain CCUG15571]
ATGAGAACAATTGTAAAAATGAGTTTTAGCTTCTTACTAGGCTTATTTACGACGAATACAGTTATAGCTGAAACCGATTC
AACGGCAATGGAAGCTACGCCAGTGATACAAAACCTGACAACAGAACATACAAATACTGCCGTTAATCAATATCAAGTAA
ATATCAATACTGCCAGTTCGGCTGAAATTCAAGACAAACTGATTGGCATCGGAGAGAAAAAAGCACTTGCTATTGTCGAA
TATCGAACGAAAAATGGCCCATTTGTAAATATAGAACAACTCACGGAAGTATCCGGTATCGGTAAAGCAACATTGGATAA
AAATCGTGAACGTATCACATTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

56.41

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

49.505

87.826

0.435
  comEA Acinetobacter baylyi ADP1

33.071

100

0.365