Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR60_RS06955 Genome accession   NZ_CP103807
Coordinates   1381734..1382378 (+) Length   214 a.a.
NCBI ID   WP_279466347.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 2 strain CCUG15571     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376734..1387378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR60_RS06910 (NYR60_06910) rplP 1376796..1377206 (-) 411 WP_005599294.1 50S ribosomal protein L16 -
  NYR60_RS06915 (NYR60_06915) rpsC 1377220..1377927 (-) 708 WP_005599293.1 30S ribosomal protein S3 -
  NYR60_RS06920 (NYR60_06920) rplV 1377946..1378278 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR60_RS06925 (NYR60_06925) rpsS 1378289..1378564 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR60_RS06930 (NYR60_06930) rplB 1378592..1379413 (-) 822 WP_279466346.1 50S ribosomal protein L2 -
  NYR60_RS06935 (NYR60_06935) rplW 1379434..1379739 (-) 306 WP_279445462.1 50S ribosomal protein L23 -
  NYR60_RS06940 (NYR60_06940) rplD 1379736..1380338 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR60_RS06945 (NYR60_06945) rplC 1380354..1380980 (-) 627 WP_005599280.1 50S ribosomal protein L3 -
  NYR60_RS06950 (NYR60_06950) rpsJ 1381006..1381317 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR60_RS06955 (NYR60_06955) sxy/tfoX 1381734..1382378 (+) 645 WP_279466347.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR60_RS06960 (NYR60_06960) fumC 1382543..1383937 (+) 1395 WP_279466348.1 class II fumarate hydratase -
  NYR60_RS06965 (NYR60_06965) - 1384051..1385118 (-) 1068 WP_279466350.1 MFS transporter -
  NYR60_RS06970 (NYR60_06970) murJ 1385138..1386706 (-) 1569 WP_279466351.1 murein biosynthesis integral membrane protein MurJ -
  NYR60_RS06975 (NYR60_06975) rpsT 1387079..1387342 (+) 264 WP_005619152.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 25027.23 Da        Isoelectric Point: 9.8611

>NTDB_id=725183 NYR60_RS06955 WP_279466347.1 1381734..1382378(+) (sxy/tfoX) [Actinobacillus genomosp. 2 strain CCUG15571]
MAISTKKLQNLKDLFSALGHISFRNYFSYIGIFKDNTMFALYDQKNEAIYIRKSIKYYPEISQTIPVHFLVDRRIGSQQS
RIFYLLPKIIINAIDTYLHWIQSAIEEYQATKTKLEDQNKNKIRLLPNMNINIERLLSRIEIYTVDDLNSVGIINVFVKL
ISQGVEVGELLLFKLYGAIKHKYVYMISEQEKRTLLLEADSALYSAGLRKRFTI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=725183 NYR60_RS06955 WP_279466347.1 1381734..1382378(+) (sxy/tfoX) [Actinobacillus genomosp. 2 strain CCUG15571]
ATGGCAATATCAACAAAAAAATTACAAAATTTAAAAGATCTGTTTTCTGCACTTGGACATATCAGTTTTAGAAACTATTT
TTCCTATATCGGTATTTTTAAAGACAATACGATGTTTGCACTTTACGATCAGAAAAATGAGGCAATTTATATCCGAAAAT
CGATAAAATATTATCCTGAAATTTCTCAGACGATTCCGGTTCATTTTTTAGTAGACCGCCGTATAGGTTCACAACAATCA
CGTATTTTCTACCTTCTTCCTAAAATCATTATAAATGCTATTGATACATACTTACATTGGATTCAGTCGGCTATTGAAGA
ATATCAAGCAACAAAAACGAAATTAGAAGACCAAAATAAGAATAAAATTCGGTTATTACCGAATATGAATATTAATATAG
AGAGACTGCTCTCTCGTATTGAAATTTATACTGTTGATGATCTAAATAGTGTAGGTATTATCAACGTCTTCGTTAAGCTT
ATTTCGCAAGGTGTAGAAGTCGGTGAATTATTACTCTTTAAACTTTACGGAGCGATTAAGCATAAATATGTTTATATGAT
TTCTGAGCAAGAAAAACGCACATTGTTACTAGAAGCAGATTCAGCATTATATAGTGCTGGTTTACGTAAACGCTTTACTA
TCTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(120-197)

TfoX N-terminal domain (TfoX_N)

(13-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

69.626

100

0.696
  sxy/tfoX Actinobacillus suis H91-0380

60.748

100

0.607
  sxy/tfoX Glaesserella parasuis strain SC1401

38.679

99.065

0.383